Query= MSMg01no373_g02.b1 MSMg01no373_g02.b1 CHROMAT_FILE:
MSMg01no373_g02.b1 PHD_FILE: MSMg01no373_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:20 2005
(582 letters)
>mm_chr8_40752899_40753880
Length = 982
Score = 1087 bits (562), Expect = 0.0
Identities = 575/582 (98%), Gaps = 7/582 (1%)
Strand = Plus / Plus
Query: 5 gaattcaattcctttc--c--ccacatggtaacttacaaccatctttaataggatccaat 60
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaattcc---cagcaaccacatggtaacttacaaccatctttaataggatccaat 260
Query: 61 gccttcttctgatgtctgtagacaactacagtgtactcatataaataaaaaaaaatctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccttcttctgatgtctgtagacaactacagtgtactcatataaataaaaaaaaatctta 320
Query: 121 gagaaaaagaaagtttaatctgaattatgggaactgtgtaaaatacccagatttctacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaaaagaaagtttaatctgaattatgggaactgtgtaaaatacccagatttctacta 380
Query: 181 cgatgataatccttaaattctttgcctccaagtagggcactaatatatatacatagcaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgatgataatccttaaattctttgcctccaagtagggcactaatatatatacatagcaca 440
Query: 241 tttcttgatccactcatctgtggaaagacagtctgataaacagttgtgtaagcatctgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcttgatccactcatctgtggaaagacagtctgataaacagttgtgtaagcatctgtg 500
Query: 301 gtagataaagtcctttgttatacagccagcgatgttataaccaggttctactgtagatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagataaagtcctttgttatacagccagcgatgttataaccaggttctactgtagatct 560
Query: 361 attttcagtttttgaaacagttcaactgtaattcctatcatggataccctaatttagtaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttcagtttttgaaacagttcaactgtaattcctatcatggataccctaatttagtaa 620
Query: 421 tcccaccaacagcacataagggttctcttttccttgcatgctttcttgcacttcttgttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcccaccaacagcacataagggttctcttttccttgcatgctttcttgcacttcttgttt 680
Query: 481 gttttgtgaatgatagctactcaatctgacagaaggacatggaactcaacactgctttaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttttgtgaatgatagctactcaatctgacagaaggacatggaactcaacactgctttaa 740
Query: 541 ttttctttttttattatttttttttattttttcactttttta 582
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttctttttttattatttttttttattttttcactttttta 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_g02.g1 MSMg01no373_g02.g1 CHROMAT_FILE:
MSMg01no373_g02.g1 PHD_FILE: MSMg01no373_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:20 2005
(477 letters)
>mm_chr8_40932470_40933346
Length = 877
Score = 922 bits (477), Expect = 0.0
Identities = 477/477 (100%)
Strand = Plus / Minus
Query: 1 tctcagctgaaggtacaggttaatagattaaatacagccactttagctgcttttcaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctcagctgaaggtacaggttaatagattaaatacagccactttagctgcttttcaaata 618
Query: 61 tgttacagcaacagaaagtctttcttaaatgactttctcattatttgagcactctcagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgttacagcaacagaaagtctttcttaaatgactttctcattatttgagcactctcagtt 558
Query: 121 tggcttggcttttgaatcttggcaagaaaattgcttcagggatagcaaagagaagatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tggcttggcttttgaatcttggcaagaaaattgcttcagggatagcaaagagaagatgaa 498
Query: 181 agcttttgttaagcttgttctggtaaataatgctcatcgccaaattgaaacaacaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agcttttgttaagcttgttctggtaaataatgctcatcgccaaattgaaacaacaaaaaa 438
Query: 241 gagatgcataaatggggagattttgttttatatttttgcttcatttgcaaattgtaaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gagatgcataaatggggagattttgttttatatttttgcttcatttgcaaattgtaaagc 378
Query: 301 tctgaaatcattgatggagaatgatctaaatttttatttctgtcttgctgctttcgctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tctgaaatcattgatggagaatgatctaaatttttatttctgtcttgctgctttcgctgc 318
Query: 361 atcatcccttagctccaagtgaatgtttatgtcctatgaaaaagatagaatatggattat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atcatcccttagctccaagtgaatgtttatgtcctatgaaaaagatagaatatggattat 258
Query: 421 gtaacagagtatcaaatcatcacaaggagtacattacattgccaattttataaggcc 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtaacagagtatcaaatcatcacaaggagtacattacattgccaattttataaggcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
