BAC Information

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BAC

Clone NameMSMg01-374D06
Chromosome8 (Build37)
Map Location 45,094,206 - 45,094,683
singlet/doubletsinglet
Overlap genenone
Upstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
Downstream geneLOC100039508, Fat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374D06.T7 (MSMg01no374_d06.b1)MSMg01-374D06.TJ (MSMg01no374_d06.g1)
ACCAG480054AG480055
length769763
length of high quality
(start - end)
557 (47 - 603)478 (67 - 544)
definitionCHROMAT_FILE: MSMg01no374_d06.b1 PHD_FILE: MSMg01no374_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:22 2005CHROMAT_FILE: MSMg01no374_d06.g1 PHD_FILE: MSMg01no374_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTAGGCAAATAACTGAATCTGGAGGATATCATCCTGAGTGAGGT
AACCCAATCACAAAAGAATACACATGATATGCACTCACTGATAAGTGGAT
ATTAGCCCAGACACTTAAGACTACCCAAGATACAATTTGTAAAACACATG
AAACTCAAGAAGAAGGAAGACTCAAATGTGGATTCTTTGTTCCTTCTTAG
AATGGGGAACAAAATACCCATGGAAGGAGTTACACAGACAAAGTTCAGAG
CTGAGCCAGAAGGACCATTCAGAGACTGCCCCACCCGGTGATCCATCCAA
TATACAACCACCAAATGGAGACACTATTGCATATGCCATCAAGATTTTGC
CTACTGGACCCTGATATAGCTCTCTCTTGTGAGACTATGCCAGTGCCTGG
CAAATATAGAAGTGGATGCTCACAGTCATCTTTTGGATGGAACACAAGGT
CCCTATAGAAGGAGCTAGAGAATGTAACCAAGGAGCTAAAGGGGTCTGTA
ACCCTATAGGAGGATCAATAACATGAACAAACCAGTACCCCATAGAACTG
TGTCTGTAATTGTAGCAGCGGATGTCCTAGTCGTCCATCAATTGGAGGAA
AGGCCTTTGGTCTTGCAAAGATCATATGCCCCAGGACAAGGGATTGCCAG
GGCCAGTAATCAAGAATGGGTGGTTTGGGGAACAAGGCGGTGAAAAGGTT
AAGGCGATTTTCTGTTTAN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATATGGGTTAGGGAAGTATCTTTTTTTGAGGTGG
AATACAGCAGGAAGTTCATCTTTTGAGCCATGTTCAAGATTTGTAACCTA
AAGTTATAGCAACGTTGGCCACAAATCTTCCTGGAAGGAGAGATTTTTTT
TCCCTTTGTTGTTGCTATTGTTATTGTTGCTGTTGTTTACTTGTTTTTAA
GTTGTGACTTATGGTCTTTCTAAGATATTCCCTTCTTTGATACCCCACCA
CTCTGTACATCACTTGACTAGGTTCTACAATAAAAAAATGACCACTCTCA
CGAGAGCTCTGATGCAAGGCCTTGAAGATGGACTTGTGAAGTTGTCCTTG
TACGTTTGAGATTCCATGGTGCCAAGGCTCTGGATGCTATCTCCAATCAC
CATATTTCCCCTTGAAAGCACCTGGGATAAGCACAGGGCATGGCCCAGAT
TGTAACTGGGACCTTATAGGGTGAAAAAGAGATGGAAAGAAATTAATGTC
ACATACTCTGTAAATGGGAACTGTTACAACAGGTAGATTGAGGATCTTAA
ATACGAATGACTTCTTTTAAAAATAACCAGAAATCTGACTATTATGTACC
CAGATTCAACCCCACGAAATAACCAGGCAAGAATTAATTACCCTATACCC
CCTATTACCTCCCCCTTATCGTGGTTACTTTGTTTTTCAATACTTTTCTT
CCTTACCCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_d06.g1 MSMg01no374_d06.g1 CHROMAT_FILE:
MSMg01no374_d06.g1 PHD_FILE: MSMg01no374_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:22 2005
         (478 letters)



>mm_chr8_45094006_45094883
          Length = 878

 Score =  816 bits (422), Expect = 0.0
 Identities = 464/478 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgggttagggaagtatctttttttgaggtggaatacagcaggaagttcatcttttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgggttagggaagtatctttttttgaggtggaatacagcaggaagttcatcttttga 260

                                                                       
Query: 61  gccatgttcaagatttgtaacctaaagttatagcaacgttggccacaaatcttcctggaa 120
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 tccatgttcaagatttgtaacctaaagttatagcaatgttggccacaaatcttcctggaa 320

                                                                       
Query: 121 ggagagattttttttccctttgttgttgctattgttattgttgctgttgtttacttgttt 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ggagagattttttttccctttgttgttgctattgttattgttgatgttgtttacttgttt 380

                                                                       
Query: 181 ttaagttgtgacttatggtctttctaagatattcccttctttgataccccaccactctgt 240
           |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct: 381 ttaagttgtgacttatggtctttctaagatatccccttctttgatatctcaccactctgt 440

                                                                       
Query: 241 acatcacttgactaggttctacaataaaaaaatgaccactctcacgagagctctgatgca 300
           |||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 441 acatcagttgactaggttctacaataaaaaaatgaccactctcactagtgctctgatgca 500

                                                                       
Query: 301 aggccttgaagatggacttgtgaagttgtccttgtacgtttgagattccatggtgccaag 360
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 501 aggccttgaagatggacttgtgaagttgcccttgtacttttgagattccatggtgccaag 560

                                                                       
Query: 361 gctctggatgctatctccaatcaccatatttccccttgaaagcacctgggataagcacag 420
           ||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 gctccagatgctatctccaatcaccatctttccccttgaaagcacctgggataagcacag 620

                                                                     
Query: 421 ggcatggcccagattgtaactgggaccttatagggtgaaaaagagatggaaagaaatt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcatggcccagattgtaactgggaccttatagggtgaaaaagagatggaaagaaatt 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)