BAC Information

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BAC

Clone NameMSMg01-374H16
Chromosome8 (Build37)
Map Location 97,586,029 - 97,770,128
singlet/doubletdoublet
Overlap geneGm770, Katnb1, Kifc3, BC016201
Upstream geneOgfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97
Downstream geneMap1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374H16.T7 (MSMg01no374_h16.b1)MSMg01-374H16.TJ (MSMg01no374_h16.g1)
ACCAG480265AG480266
length777785
length of high quality
(start - end)		440 (71 - 510)336 (60 - 395)
definitionCHROMAT_FILE: MSMg01no374_h16.b1 PHD_FILE: MSMg01no374_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:43 2005CHROMAT_FILE: MSMg01no374_h16.g1 PHD_FILE: MSMg01no374_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,586,029 - 97,586,468)(97,769,793 - 97,770,128)
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTAAGGATTACTGTTGGAAAGAGAGTTCCCCTTAGCTGGTGGTCA
CCCACCTTCCCTGTGCAGGAGGCAGAGAAAGCGAAGCCCGACCCCCTGCA
TGGCCTGCGGGTACACTCCTGGGTCCTGGTGCTGGCAGGAAAGCGAGAGG
TGCCTGAGAGCTTCTTCATCGACCCTCTGACTGCACGCAGCTACAGTACC
AAGGATGAGCACTTCCTGGGCATCGAGAGCCTCTGGAACCACAAGAACTA
CTGGATCAACATGCAGGATTGCTGGAACTGCTGCAAGGTGTGCCGGAGTC
GGGAGAGGGGTGGGTAAAGACCGGGGATGGGGGGTTGTGGGGAGCCTGGN
CACCTACTCTCTGATAGCAGGGTCTGGTGGAAGTCCCAGACTCCATACCC
ACAGCTATCAAGGGCCATTCTGGCAAGATGAACTTCACCAGTTTGCTATG
TGCATTCTTTTTAACCCATATGCTAATTGGTTTATGCCAATGAACTCTGG
TTGAACGTTGTCCATCTAAAGGGTTAATCACACTGGCCACCGAAGGCCCT
GCTTTCTGGTCCCTTAAAATATAAAAATACTCCTTCTTCCTGGTATCCCC
TTTGCTACATTTTTTGTCCCTTACCTTATGTCCTTTTCTATATCTTCTTT
CTCTTATTTTAATTATACATTTTTTCTCAATTTTCTTATCAACCTTTTTC
TCTATTCCTACACTTTTTCTTACATAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAAACAGGAGAAGAGGGTCCAGGAGACAGCATAAGAAAACAG
AAACATTTGACTAGCTCTCATGTAATATGCTAGGTTTATTTGCTGGGCTT
GCCTTCTGTTTAAGGCTCTACCCATCTGACTATAGTTGATGTTGATGTTT
TTGTGACAGAGTCTCACTGTGTAGCCCTACCTGGTCTGGAATTCAGAGTC
ACTTGCCTCTCCAGGGCTGGAATTAGAGGCATGCGCCACTATGCTTAGCT
TAGTGAACTTCCGGTCTCAGCTTCTTGAGGGCAATCTCAGGTGTGTTCTG
CCACGGCTAGCAAGATTGGGTTTTTGTTGTTGCTGTTTTTGTTGTTGCCG
ATTTGTTTTAATTTTTGAGAATATAAAATGCTATTAGTACTTTTGACGCA
CCATACCGTATGCTCATGTAAACGTCTCACTCCCTCTTTCCTCTGTTCTC
TTCCTCTCACCGGCATCAATCATTTTATGCCTGTTCCATATTCCCTTTAT
CTCTCCTTTACCCTTCCCTCCTTTTCCTTTCTTTCTTTTTTCCCCTTCCC
TCCACCTTTTCCCTATATTACCTCTTTCTCCTTCACTCTCCCCCATACTC
ATCTTTCTTTTTCTCCCCCTATCTTCTTTCTCTTCTCTTACTTCTTTACT
TCCCCCTTACCTTCATCTCTTCTTCCTACTATCTTTCCCTTCATTCCTCT
TTACCCCTTCCCCTTACTTCCCCCTTCCCCATTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_h16.b1 MSMg01no374_h16.b1 CHROMAT_FILE:
MSMg01no374_h16.b1 PHD_FILE: MSMg01no374_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:43 2005
         (440 letters)



>mm_chr8_97585829_97586668
          Length = 840

 Score =  822 bits (425), Expect = 0.0
 Identities = 436/440 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaagagagttccccttagctggtggtcacccaccttccctgtgcaggaggcagagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaagagagttccccttagctggtggtcacccaccttccctgtgcaggaggcagagaaa 260

                                                                       
Query: 61  gcgaagcccgaccccctgcatggcctgcgggtacactcctgggtcctggtgctggcagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgaagcccgaccccctgcatggcctgcgggtacactcctgggtcctggtgctggcagga 320

                                                                       
Query: 121 aagcgagaggtgcctgagagcttcttcatcgaccctctgactgcacgcagctacagtacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcgagaggtgcctgagagcttcttcatcgaccctctgactgcacgcagctacagtacc 380

                                                                       
Query: 181 aaggatgagcacttcctgggcatcgagagcctctggaaccacaagaactactggatcaac 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggatgagcacttcctgggcattgagagcctctggaaccacaagaactactggatcaac 440

                                                                       
Query: 241 atgcaggattgctggaactgctgcaaggtgtgccggagtcgggagaggggtgggtaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcaggattgctggaactgctgcaaggtgtgccggagtcgggagaggggtgggtaaaga 500

                                                                       
Query: 301 ccggggatggggggttgtggggagcctggncacctactctctgatagcagggtctggtgg 360
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 501 ccggggatggggggttgtggggagcctggccacctaccctctgatagcagggtctggtgg 560

                                                                       
Query: 361 aagtcccagactccatacccacagctatcaagggccattctggcaagatgaacttcacca 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtcccagactccacacccacagctatcaagggccattctggcaagatgaacttcacca 620

                               
Query: 421 gtttgctatgtgcattcttt 440
           ||||||||||||||||||||
Sbjct: 621 gtttgctatgtgcattcttt 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_h16.g1 MSMg01no374_h16.g1 CHROMAT_FILE:
MSMg01no374_h16.g1 PHD_FILE: MSMg01no374_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:43 2005
         (336 letters)



>mm_chr8_97769791_97770526
          Length = 736

 Score =  642 bits (332), Expect = 0.0
 Identities = 335/336 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacaggagaagagggtccaggagacagcataagaaaacagaaacatttgactagctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaacaggagaagagggtccaggagacagcataagaaaacagaaacatttgactagctctc 279

                                                                       
Query: 61  atgtaatatgctaggtttatttgctgggcttgccttctgtttaaggctctacccatctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atgtaatatgctaggtttatttgctgggcttgccttctgtttaaggctctacccatctga 219

                                                                       
Query: 121 ctatagttgatgttgatgtttttgtgacagagtctcactgtgtagccctacctggtctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ctatagttgatgttgatgtttttgtgacagagtctcactgtgtagccctacctggtctgg 159

                                                                       
Query: 181 aattcagagtcacttgcctctccagggctggaattagaggcatgcgccactatgcttagc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 aattcagagttacttgcctctccagggctggaattagaggcatgcgccactatgcttagc 99

                                                                       
Query: 241 ttagtgaacttccggtctcagcttcttgagggcaatctcaggtgtgttctgccacggcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  ttagtgaacttccggtctcagcttcttgagggcaatctcaggtgtgttctgccacggcta 39

                                               
Query: 301 gcaagattgggtttttgttgttgctgtttttgttgt 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 38  gcaagattgggtttttgttgttgctgtttttgttgt 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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