BAC Information

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BAC

Clone NameMSMg01-374M23
Chromosome8 (Build37)
Map Location 121,150,747 - 121,151,138
singlet/doubletsinglet
Overlap geneCdh13
Upstream genePlcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneHsbp1, Mlycd, Osgin1, Efcbp2, Gm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374M23.T7 (MSMg01no374_m23.b1)MSMg01-374M23.TJ (MSMg01no374_m23.g1)
ACCAG480515
length771746
length of high quality
(start - end)
---438 (58 - 495)
definitionCHROMAT_FILE: MSMg01no374_m23.b1 PHD_FILE: MSMg01no374_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:10 2005CHROMAT_FILE: MSMg01no374_m23.g1 PHD_FILE: MSMg01no374_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTT
AATCAAGGAAACTGGCCAAACGAAAATTTGACCGGGACCCCTAAAAAATT
CCTGTAATGGTTGGTAACAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGCTGAACTCGACAGTGGGGTTTACCGAGGCTCGGAGATACCC
GTAGGAGAATGCACCATAACATGAACATCAACCACATCTGCACAGTACAG
GGCTGAGCTCGGGTGTGGGCACATGGTGTATTTAATACATTGGTCTCATG
TTGTTCCACAGACCCCCAAATATGCAAGAGTACTACCAACATTTCAAGGC
TCTGGAGACAACTCAGTTAGGAGTGGCTTCCGTGCCAGCATGTTGACCCG
AGCTTGATCCCTAAAACCAATTGTTGAGATGTTGCAGTGGTTGATACATC
CTGTAATGACATCCTGTAATGCCAGTGCTTAAGAGATACTGATGGGTGGG
TCCCTGGAGTGAGGTAGCCAGCCAGCCTGCCTGTGTTCAGTTCTAGATTA
AAGAGACTGCTTCACTAACGATGGACAGCTTATGAGGACTAATGGCCAAG
CTTGTTCTCTTACCAGATATAGACAGAGAAGGGGAAGGGACATTGGGATG
ATAGAGAGAGAGACAAATAGATTTATTTTCTTCTTTCTTCCTTTTTCTTT
GTCTTTTCATTTTTGTCCTTTTTTTTTTTAATTTTCCTTTATTCTTCCTT
TTATCTTCTATATATTTCCAAACTCATTCCAGTTCTAATGCCCAACCTCT
TCTTTTTCCATCTTTTTCTCTAATATTATACTCTTTCATTGCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_m23.g1 MSMg01no374_m23.g1 CHROMAT_FILE:
MSMg01no374_m23.g1 PHD_FILE: MSMg01no374_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:10 2005
         (438 letters)



>mm_chr8_121150747_121151586
          Length = 840

 Score =  708 bits (366), Expect = 0.0
 Identities = 385/392 (98%), Gaps = 2/392 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgaactcgacagtggggtttaccgaggctcggagatacccgtaggagaatg--cacc 58
           ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||  ||||
Sbjct: 392 agctgaactcgacagtgggatttaccgaggctcggagatacccataggagaatgcacacc 333

                                                                       
Query: 59  ataacatgaacatcaaccacatctgcacagtacagggctgagctcgggtgtgggcacatg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ataacatgaacatcaaccacatctgcacagtacagggctgagctcgggtgtgggcacatg 273

                                                                       
Query: 119 gtgtatttaatacattggtctcatgttgttccacagacccccaaatatgcaagagtacta 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 272 gtgtatttaatacattggtctcatgttgttccacagacccccaaatatgcaggagtacta 213

                                                                       
Query: 179 ccaacatttcaaggctctggagacaactcagttaggagtggcttccgtgccagcatgttg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ccaacatttcaaggctctggagacaactcagttaggagtggcttccgtgccagcatgttg 153

                                                                       
Query: 239 acccgagcttgatccctaaaaccaattgttgagatgttgcagtggttgatacatcctgta 298
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 152 acccgagcttgatccctaaaaccaattgttgagatgttgcagtgggtgatacatcctgta 93

                                                                       
Query: 299 atgacatcctgtaatgccagtgcttaagagatactgatgggtgggtccctggagtgaggt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 92  atgacatcctgtaatgccagtgcttaagagatactgatgggtgggtccctggagtaaggt 33

                                           
Query: 359 agccagccagcctgcctgtgttcagttctaga 390
           ||||||||||||||||||||||||||||||||
Sbjct: 32  agccagccagcctgcctgtgttcagttctaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 840
Length adjustment: 9
Effective length of query: 429
Effective length of database: 831
Effective search space:   356499
Effective search space used:   356499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)