BAC Information

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BAC

Clone NameMSMg01-375D20
Chromosome8 (Build37)
Map Location 63,025,100 - 63,201,793
singlet/doubletdoublet
Overlap geneMfap3l
Upstream geneAadat
Downstream geneLOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4, Palld, LOC100040872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375D20.T7 (MSMg01no375_d20.b1)MSMg01-375D20.TJ (MSMg01no375_d20.g1)
ACCAG480842AG480843
length759791
length of high quality
(start - end)		581 (36 - 616)446 (78 - 523)
definitionCHROMAT_FILE: MSMg01no375_d20.b1 PHD_FILE: MSMg01no375_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:46 2005CHROMAT_FILE: MSMg01no375_d20.g1 PHD_FILE: MSMg01no375_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,025,100 - 63,025,665)(63,201,348 - 63,201,793)
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGCG
GAATTCCCCTCATATTATCTCATTCTTGGACCATGTTCCAAAATCTCCAT
CCTTTTTTATTTTTAGTAGTAGGATGTTCAGAGATTTGATTTGAGATATT
GTTGATAAATCTAATTGTCATTTGATGCATGGCTATCCTATCAGCAAGCA
AATTATAAATGTAATGAGCAATGTTAGAACAGTGAAGCCACTGTAAAAGC
ATTCTGCCATCAAGAACAAGGATCCAAACCATGTCCAGAACTATTTGGTT
ACATGATTATATTGATCAGAAAAGTCTAGAGAATAACTTGAAAAAAGGCC
CATATAATTAGTAGTTATAATACCTTGTAAAACATAAACCCATATAAACA
CAAATGTAATGATGCTCTACGCAAATGGGAAATGATTAAAATTCCAACAA
ATAAAGCAGACTCAGGCTCATCTTCAGATGAATGAATGAGTCTATCGTGA
CCCCAAGATCCTCCGTAAGCCCCAGTGGTTAGTAATGATAACAGGCTCTG
GATCCATCTAATCTACAAGCTGAAGTAAAGAAGGATGGGGAACATAAGAC
CAATGCACATGTTCAGAGGCCATCACCACAGATGCACAGGTCACAGTCGC
GAGCATCGCCAGCCAAAGATTCTCAAGTGACCTGTGGCTCTCTGTGCTCC
AAAAATAACTTCTCCCCTGGGGCTAAGGCCTATATAAATTGACCCCCAGT
TGGTCAAAT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGATGGATAGAGTCCAGAAGC
TTCAGAAAGGGACAACAGAAATACGAGGAGCTGAAGGAGATCTGGGACGA
TATTCTCTCCCATTTAAGGATCTGGTCATCTTTTAGGAGGGAGGGAAAAT
GGGTTCCACTCATGGATGATAAACATGTGTAATAAACATGGATCTAACTA
TGCCTGCTCTTAGGATGACCCCTGGTAAAAGTGATTAGAAGAATGTTAGA
GGCCACGTGCTGAGAAGTTATTTGCTTTCAATCTGAAGAGGTTCAGACTA
GATTTTGAATAGCTTTCATGGGAGCCTTTTACACAGGAGCATCCAAAGCC
TTCTCTAAGACATTACTACTTATAGGCATTTACTAAATGACCCTTGATCT
GGTTTTGATAGGAAGAATTACCTTAGATAATTATGGAATGTCTCAATTTA
CCCTCAGCTACCTCTCTTGTATTTTTTTGAATTCAAGGGAGGCCTTTTTG
TGAAGCGGAAAAGATCCAAATATCTCGGTTGCATAGACCCATTGGATACT
GGTCCGTTCTTCTTAAAACCTTCTGGCGGTTTGGGCCCTTGTTTGTGGCT
TTCTTTCTTTCCTTACTCTTCCCGGAGTTAAATATATCCTCTATTCCCTG
TTATTTGTGGGCCCTTCTGGGATTTCCCATTGTGGTCTTCGTGGGATATA
ACTCTTGTCCTACGTTAGACTGTTTTATCGCATTTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_d20.b1 MSMg01no375_d20.b1 CHROMAT_FILE:
MSMg01no375_d20.b1 PHD_FILE: MSMg01no375_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:46 2005
         (581 letters)



>mm_chr8_63024885_63025865
          Length = 981

 Score = 1071 bits (554), Expect = 0.0
 Identities = 563/566 (99%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcccctcatattatctcattcttggaccatgttccaaaatctccatccttttttat 75
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcccctcatatgatttcattcttggaccatgttccaaaatctccatccttttttat 275

                                                                       
Query: 76  ttttagtagtaggatgttcagagatttgatttgagatattgttgataaatctaattgtca 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttttagtagtaggatgttcagagatttgatttgagatattgttgataaatctaattgtca 335

                                                                       
Query: 136 tttgatgcatggctatcctatcagcaagcaaattataaatgtaatgagcaatgttagaac 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tttgatgcatggctatcctatcagcaagcaaattataaatgtaatgagcaatgttagaac 395

                                                                       
Query: 196 agtgaagccactgtaaaagcattctgccatcaagaacaaggatccaaaccatgtccagaa 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agtgaagccactgtaaaagcattctgccatcaagaacaaggatccaaaccatgtccagaa 455

                                                                       
Query: 256 ctatttggttacatgattatattgatcagaaaagtctagagaataacttgaaaaaaggcc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctatttggttacatgattatattgatcagaaaagtctagagaataacttgaaaaaaggcc 515

                                                                       
Query: 316 catataattagtagttataataccttgtaaaacataaacccatataaacacaaatgtaat 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 catataattagtagttataataccttgtaaaacataaacccatataaacacaaatgtaat 575

                                                                       
Query: 376 gatgctctacgcaaatgggaaatgattaaaattccaacaaataaagcagactcaggctca 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gatgctctacgcaaatgggaaatgattaaaattccaacaaataaagcagactcaggctca 635

                                                                       
Query: 436 tcttcagatgaatgaatgagtctatcgtgaccccaagatcctccgtaagccccagtggtt 495
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 636 tcttcagatgaatgaatgagtctatcgtgaccccaaggtcctccgtaagccccagtggtt 695

                                                                       
Query: 496 agtaatgataacaggctctggatccatctaatctacaagctgaagtaaagaaggatgggg 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 agtaatgataacaggctctggatccatctaatctacaagctgaagtaaagaaggatgggg 755

                                     
Query: 556 aacataagaccaatgcacatgttcag 581
           ||||||||||||||||||||||||||
Sbjct: 756 aacataagaccaatgcacatgttcag 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_d20.g1 MSMg01no375_d20.g1 CHROMAT_FILE:
MSMg01no375_d20.g1 PHD_FILE: MSMg01no375_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:46 2005
         (446 letters)



>mm_chr8_63201148_63201993
          Length = 846

 Score =  855 bits (442), Expect = 0.0
 Identities = 445/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcggatggatagagtccagaagcttcagaaagggacaacagaaatacgaggagctgaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tcggatggatagagtccagaagcttcagaaagggacaacagaaatacgaggagctgaagg 587

                                                                       
Query: 61  agatctgggacgatattctctcccatttaaggatctggtcatcttttaggagggagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agatctgggacgatattctctcccatttaaggatctggtcatcttttaggagggagggaa 527

                                                                       
Query: 121 aatgggttccactcatggatgataaacatgtgtaataaacatggatctaactatgcctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aatgggttccactcatggatgataaacatgtgtaataaacatggatctaactatgcctgc 467

                                                                       
Query: 181 tcttaggatgacccctggtaaaagtgattagaagaatgttagaggccacgtgctgagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tcttaggatgacccctggtaaaagtgattagaagaatgttagaggccacgtgctgagaag 407

                                                                       
Query: 241 ttatttgctttcaatctgaagaggttcagactagattttgaatagctttcatgggagcct 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 406 ttatttgctttcaatctgaagaggttcagactagatattgaatagctttcatgggagcct 347

                                                                       
Query: 301 tttacacaggagcatccaaagccttctctaagacattactacttataggcatttactaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tttacacaggagcatccaaagccttctctaagacattactacttataggcatttactaaa 287

                                                                       
Query: 361 tgacccttgatctggttttgataggaagaattaccttagataattatggaatgtctcaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgacccttgatctggttttgataggaagaattaccttagataattatggaatgtctcaat 227

                                     
Query: 421 ttaccctcagctacctctcttgtatt 446
           ||||||||||||||||||||||||||
Sbjct: 226 ttaccctcagctacctctcttgtatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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