BAC Information

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BAC

Clone NameMSMg01-375E03
Chromosome8 (Build37)
Map Location 89,385,734 - 89,557,831
singlet/doubletdoublet
Overlap geneBC004022, LOC666960
Upstream genePhkb, LOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178
Downstream geneEG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik, Zfp423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375E03.T7 (MSMg01no375_e03.b1)MSMg01-375E03.TJ (MSMg01no375_e03.g1)
ACCAG480856AG480857
length749749
length of high quality
(start - end)		531 (53 - 583)475 (83 - 557)
definitionCHROMAT_FILE: MSMg01no375_e03.b1 PHD_FILE: MSMg01no375_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:48 2005CHROMAT_FILE: MSMg01no375_e03.g1 PHD_FILE: MSMg01no375_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,557,304 - 89,557,831)(89,385,734 - 89,386,208)
sequence
NNNNTTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTGTGTAAACCAGTCTGGCCTCAAATCCAGAGTTCTG
ACAGCTAAATTTATATTTTTCTAGATTTAGGCAAAAGTATTTCATTCGTG
TGTGTTGATATGTTTTTAAATGTCAGAGTGTGCTTGTTTGTTAGTAATAC
TATGTAATAATTGATTTAACACATTAAGTTTATATCCCAAAGCCTTGCTG
TAGGTCATTGCTGCTTTCTTGGAAAACTTTTCTCTATTCTTTTAGACTTT
TGATAGATAATCTAGCAGTCTATGAACAATAGCAGTTTAACTTCTTTTCT
ATCACAATCAGCATATCTTTTATTTTACCTTCTTGTCATATTGAGTTAGG
TCTATCAGGATAATTTTGAGAAGGAATGAGTAAGACTGGAAATCCTTGTT
TTGTTCTGCTATGAGTAGGAAAGTTGGTTTGTTGGCATTACTGGGGCTAG
CTGGAGGTGTTGTGGCTATTCCTTGTGAAGCAGAGGACAGCTATTTTCCT
TCTCTATAGTTTTTAANATCACGAATGAGTGTTGGATCTGCTCAAGTAAA
TTTTCTTCATCTATTCTACAATAATATGATGTTTCTACTTTAGCTTGTGT
GTAGCGTCAATTACATTGGCTAAATATTAAATGTTAAATCTAACTTTGCT
TGTCTGGAAAAAATTTCTTCTCTGTTTTCTACCAAAAAATCTTTTTAAG

TTCTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGTTTGATTTCCGACTC
TCTCTGATTACTGGGGAGGTTCTCGTTGCTCTCAAAGAGCTTCACAAACT
GCTGAATGTGACTCCTGGCCATGACCACAGCTTCAGCGCTTCCTCGGATG
CCAAGAAGCCCAGTATCTAAAACACAGAGGTCAGCACACGTATCCTGAAT
TAAGCTCTTCAAAAAGAGACTTTGTGCCCCGACAAAAATGCAGTGCATGG
CCTTGGGGTAGCACTCTTTCTCCTCCAGCTCCGGCTCGCAGATCCCCTTG
ATATACTCCTGTGAAGAGAAGACAAAGTTAGACCAATTCACCAGTTCCCC
AGGACATGACTGTCAACAGCCAGGCTGAATTTTTTTTTTTAAACCACTAA
ACATATCTATAATTTGGAGCAACATACTTTGATTTCAATGAGAATAAAGT
ACAGTTCTGAACTCTGTGAGTGTGTGTGTGAGGCTATTTGTCTGTTTCAC
TCTGAACTATTTAATCAACTTTAGAGGAATTGAAACTTTGTATAACTTTA
CGAGTGGGAATGTATAACCCTTTCCCTGTGCTTTGCTTTGTGATCTTAAG
GCCTTGCCTCAACTTCACCGAAGATAACCCTCCTCGTGGAATTTTTTTCC
TGTTTTAAGCACAAACATAACTCCCTTTTTCCTCTGAATTAATACCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_e03.b1 MSMg01no375_e03.b1 CHROMAT_FILE:
MSMg01no375_e03.b1 PHD_FILE: MSMg01no375_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:48 2005
         (531 letters)



>mm_chr8_89557101_89558031
          Length = 931

 Score = 1000 bits (517), Expect = 0.0
 Identities = 525/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgtgtaaaccagtctggcctcaaatccagagttctgacagctaaatttata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ggaattcactgtgtaaaccagtctggcctcaaatccagagttctgacagctaaatttata 672

                                                                       
Query: 64  tttttctagatttaggcaaaagtatttcattcgtgtgtgttgatatgtttttaaatgtca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tttttctagatttaggcaaaagtatttcattcgtgtgtgttgatatgtttttaaatgtca 612

                                                                       
Query: 124 gagtgtgcttgtttgttagtaatactatgtaataattgatttaacacattaagtttatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 611 gagtgtgcttgtttgttagtaatactatgtaataattgatttaacacattaagtttatac 552

                                                                       
Query: 184 cccaaagccttgctgtaggtcattgctgctttcttggaaaacttttctctattcttttag 243
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cccagagccttgctgtaggtcattgctgctttcttggaaaacttttctctattcttttag 492

                                                                       
Query: 244 acttttgatagataatctagcagtctatgaacaatagcagtttaacttcttttctatcac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acttttgatagataatctagcagtctatgaacaatagcagtttaacttcttttctatcac 432

                                                                       
Query: 304 aatcagcatatcttttattttaccttcttgtcatattgagttaggtctatcaggataatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatcagcatatcttttattttaccttcttgtcatattgagttaggtctatcaggataatt 372

                                                                       
Query: 364 ttgagaaggaatgagtaagactggaaatccttgttttgttctgctatgagtaggaaagtt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttgagaaggaatgagtaagactggaaatccttgttttgttctgctatgagtaggaaagtt 312

                                                                       
Query: 424 ggtttgttggcattactggggctagctggaggtgttgtggctattccttgtgaagcagag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggtttgttggcattactggggctagctggaggtgttgtggctattccttgtgaagcagag 252

                                                           
Query: 484 gacagctattttccttctctatagtttttaanatcacgaatgagtgtt 531
           ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 251 gacagctattttccttctctatagtttttaaaatcacgaatgagtgtt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_e03.g1 MSMg01no375_e03.g1 CHROMAT_FILE:
MSMg01no375_e03.g1 PHD_FILE: MSMg01no375_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:48 2005
         (475 letters)



>mm_chr8_89385534_89386408
          Length = 875

 Score =  888 bits (459), Expect = 0.0
 Identities = 471/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgtttgatttccgactctctctgattactggggaggttctcgttgctctcaaagagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgtttgatttccgactctctctgattactggggaggttctcgttgctctcaaagagctt 260

                                                                       
Query: 61  cacaaactgctgaatgtgactcctggccatgaccacagcttcagcgcttcctcggatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaaactgctgaatgtgactcctggccatgaccacagcttcagcgcttcctcggatgcc 320

                                                                       
Query: 121 aagaagcccagtatctaaaacacagaggtcagcacacgtatcctgaattaagctcttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaagcccagtatctaaaacacagaggtcagcacacgtatcctgaattaagctcttcaa 380

                                                                       
Query: 181 aaagagactttgtgccccgacaaaaatgcagtgcatggccttggggtagcactctttctc 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaggctttgtgccccgacaaaaatgcagtgcatggccttggggtagcactctttctc 440

                                                                       
Query: 241 ctccagctccggctcgcagatccccttgatatactcctgtgaagagaagacaaagttaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccagctccggctcgcagatccccttgatatactcctgtgaagagaagacaaagttaga 500

                                                                       
Query: 301 ccaattcaccagttccccaggacatgactgtcaacagccaggctgaatttttttttttaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 ccaattcaccagttccccaggacatgactgtcaacagccaggctgaatttttttttttta 560

                                                                       
Query: 361 accactaaacatatctataatttggagcaacatactttgatttcaatgagaataaagtac 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accactacacatatctataatttggagcaacatactttgatttcaatgagaataaagtac 620

                                                                  
Query: 421 agttctgaactctgtgagtgtgtgtgtgaggctatttgtctgtttcactctgaac 475
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatctgaactctgtgagtgtgtgtgtgaggctatttgtctgtttcactctgaac 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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