BAC Information

Click to search

BAC

Clone NameMSMg01-375E09
Chromosome8 (Build37)
Map Location 106,345,978 - 106,346,455
singlet/doubletsinglet
Overlap geneLOC100041397
Upstream geneEG667618, LOC100041368, 1600027J07Rik
Downstream geneLOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375E09.T7 (MSMg01no375_e09.b1)MSMg01-375E09.TJ (MSMg01no375_e09.g1)
ACCAG480868AG480869
length787760
length of high quality
(start - end)		482 (55 - 536)423 (82 - 504)
definitionCHROMAT_FILE: MSMg01no375_e09.b1 PHD_FILE: MSMg01no375_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:49 2005CHROMAT_FILE: MSMg01no375_e09.g1 PHD_FILE: MSMg01no375_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTCTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCAGATGTACCAAAGAAAGATCTAGGGTATCCTCCAC
TTTCTCATATTTCTCCCAATGAAGCTTCTACCTGCAAGTCATTCTAGCCC
CAGATTCCCACTAATGGAACTCTGTTTCCTTCTCTCAAGCTCCTTTACCT
TACAATGCTTTTGTTAATGCACTAATAGGAAAAAGGAAACTCAGAAGGTA
TTGTTTATTGAGCACTATTGCTGTGGTCCCTTCTCCCCCGCCCCCCTAGA
GAAAGCACCAATTTCCATGAGGTACAAGGCATGCCTTGGGCATTGGGGTG
AAAGAAATACACTCTTCCAGAAAGGACCCAACCAAAACCCCACTGACTTT
GCTAACAGCAATTTAGGACTTCCTAAATTCTTGGAGGGTCGAAAGAGTCA
TTGAAATGGCGTGGCTAAAGTTGGGGACGGGATTTTTCTGGAATCAGTAA
TCTTTCTCCAGTTTCCTATCGAAAGGAATCATATGAACCCCAAAAGTAAA
TGTTTGAGGTGGATCCATACATGGGGAAAAAAAGAGGCTGATAAGGGAGG
AATGAAAAACTGAAAGGCTTAAAAACCAACTGGGGAAAAAAAAACAACCC
CTTGAAAAAAAAGGTTCCTAAAAGCCCCCTGGCCCCTCCAAAAAGGAGCG
AAAAAATTTGTGGGTAAAACCGGAATTGCCTCTATAACCCCAACATGAAT
TCCCTTGTATTACTCCCAGCCCTTTTATTTTTTTATA

NTTTTTTCGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTAGCTCTGAGCCC
CATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTC
TTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGACTGGTAAATA
TCCTTTCCCAATCTGTTGGTGGCCTTTTGTCTTATTGATGGTGTCTTTTG
CCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTCGAT
CTTACAGGACAAGCCATTGCTGTTCTATTCAGGAATTTTCCCCCTGTGCT
CATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCACTGTTT
CTGGTTTTATGTGGAGTTCCTTGATCCACTTAGAGTTGACCTTAGTACAA
GGAGATAGGAATGGATCAATTCGCATTCTTCTACAGGATAACAACCAGTT
GTGCCAGCACCAATTGTTGAAAATGCTGTCTTTTTTCCTTTGGATGGTTT
TAGCTCCCTTGTCCAAGATCAAGTGACCATTAGTGTGTGTGTTCAATTTT
CGGGCTTTCATTTCATTTCAATTGGCCTATTTGTCTGGCTCCATACCCAA
AACCTGTTGTTTTTTTTTCTTAATTGTTTCTGTATAAATCTTTTAGTTTC
CTCATGTGGATTTCCCCCATAAGGAATCTTTTTTCTTTGCAGAAATCTTC
TTTCCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_e09.b1 MSMg01no375_e09.b1 CHROMAT_FILE:
MSMg01no375_e09.b1 PHD_FILE: MSMg01no375_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:49 2005
         (482 letters)



>mm_chr8_106345774_106346655
          Length = 882

 Score =  893 bits (462), Expect = 0.0
 Identities = 474/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagatgtaccaaagaaagatctagggtatcctccactttctcatatttctccca 64
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagatgtagtgaagaaagatctagggtatcctccactttctcatatttctccca 264

                                                                       
Query: 65  atgaagcttctacctgcaagtcattctagccccagattcccactaatggaactctgtttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgaagcttctacctgcaagtcattctagccccagattcccactaatggaactctgtttc 324

                                                                       
Query: 125 cttctctcaagctcctttaccttacaatgcttttgttaatgcactaataggaaaaaggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttctctcaagctcctttaccttacaatgcttttgttaatgcactaataggaaaaaggaa 384

                                                                       
Query: 185 actcagaaggtattgtttattgagcactattgctgtggtcccttctcccccgccccccta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actcagaaggtattgtttattgagcactattgctgtggtcccttctcccccgccccccta 444

                                                                       
Query: 245 gagaaagcaccaatttccatgaggtacaaggcatgccttgggcattggggtgaaagaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagaaagcaccaatttccatgaggtacaaggcatgccttgggcattggggtgaaagaaat 504

                                                                       
Query: 305 acactcttccagaaaggacccaaccaaaaccccactgactttgctaacagcaatttagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acactcttccagaaaggacccaaccaaaaccccactgactttgctaacagcaatttagga 564

                                                                       
Query: 365 cttcctaaattcttggagggtcgaaagagtcattgaaatggcgtggctaaagttggggac 424
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctttctaaattcttggagggtcgaaagagtcattgaaatggcgtggctaaagttggggac 624

                                                                     
Query: 425 gggatttttctggaatcagtaatctttctccagtttcctatcgaaaggaatcatatga 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gggatttttctggaatcagtaatctttctccagtttcctatcgaaaggaatcatatga 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |