Query= MSMg01no375_h20.b1 MSMg01no375_h20.b1 CHROMAT_FILE:
MSMg01no375_h20.b1 PHD_FILE: MSMg01no375_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:06 2005
(468 letters)
>mm_chr8_111450179_111451046
Length = 868
Score = 804 bits (416), Expect = 0.0
Identities = 440/452 (97%), Gaps = 8/452 (1%)
Strand = Plus / Minus
Query: 25 atggaaagctcctcttcccatcactttagccggtggtgggactgtgggtatggtgaacac 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 atggaaagctcctcttcccatcactttagccggtggtgggactgtgggtatggtgaacac 809
Query: 85 taggctgtgagccagtgacactaccttgggaagatcctgagtaggggctgagctgtccgt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 taggctgtgagccagtgacactaccttgggaagatcctgagtaggggctgagctgtccgt 749
Query: 145 gtcacttggaagttccttctctattgtccgtcttggggctatgtcccttgaaggtgaaat 204
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 748 gtcatttggaagttccttctctattgtccgtcttggggctatgtcccttgaaagtgaaat 689
Query: 205 ttaccaatgcg----g----ttcctttgtggggtcctggggtgagcccaccgagaacttg 256
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 688 ttaccaatgcgccgcgcttcttcctttgtggggtcctagggtgagcccaccgagaacttg 629
Query: 257 ggataactgcctgacatttgatacttgtagagagtccagaggtaggcaccacccccactt 316
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 628 ggataactgcctgacatttgatacttgtagagagtccagaagtaggcaccacccccactt 569
Query: 317 cttaacatcagactcttagctaaagcaccgctgacagcccctccatctgaacttccatct 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cttaacatcagactcttagctaaagcaccgctgacagcccctccatctgaacttccatct 509
Query: 377 cccaaaccagcaacataatggaggagccaattaaatgattattaattcatgttactttcc 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cccaaaccagcaacataatggaggagccaattaaatgattattaattcatgttactttcc 449
Query: 437 gtaagccaggggttctcatcgccttgcattcc 468
||||||||||||||||||||||||||||||||
Sbjct: 448 gtaagccaggggttctcatcgccttgcattcc 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_h20.g1 MSMg01no375_h20.g1 CHROMAT_FILE:
MSMg01no375_h20.g1 PHD_FILE: MSMg01no375_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:06 2005
(337 letters)
>mm_chr8_111266695_111267431
Length = 737
Score = 499 bits (258), Expect = e-145
Identities = 327/372 (87%), Gaps = 35/372 (9%)
Strand = Plus / Plus
Query: 1 cagggtggagtggatcttgtctctcagcgatggggaggaacggtagctcccctgggatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 166 cagggtggagtggatcttgtctctcagcgatggggaggaacggtagctcccatgggatgg 225
Query: 61 ctccttagtccccatgagaggctaaaggctctgcattaggcacaggtagagt-------- 112
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 226 gtccttagtccccatgagaggctaaaggctcagcattaggcacaggtagagttggagtat 285
Query: 113 -----------------------gtatgt----tccgccaggaatgtcatagagctccct 145
|||||| ||| |||||||||||||||||||||||
Sbjct: 286 acaggtttttttttttttttaaggtatgtatgctccaccaggaatgtcatagagctccct 345
Query: 146 tgttcttctaaccaatgggctaaacggataaactatcctcagtgtgggtacaggaggaga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgttcttctaaccaatgggctaaacggataaactatcctcagtgtgggtacaggaggaga 405
Query: 206 gatggatctcagaaagtgtgggtggggatgggtaagcctgtttgttttatagaagggcta 265
|||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct: 406 gatggatctcggaaagcgtgggtggggatgggtaagcctgggtgctttatagaagggcta 465
Query: 266 gggagggaaggcagagaagtctctctaggaactgtccaggttttggatggagaagttgct 325
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gggagggaaggcagagacgtctctctaggaactgtccaggttttggatggagaagttgct 525
Query: 326 ctctgtgtgctg 337
||||||||||||
Sbjct: 526 ctctgtgtgctg 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
