Query= MSMg01no375_o03.b1 MSMg01no375_o03.b1 CHROMAT_FILE:
MSMg01no375_o03.b1 PHD_FILE: MSMg01no375_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:37 2005
(605 letters)
>mm_chr8_62253093_62254096
Length = 1004
Score = 1114 bits (576), Expect = 0.0
Identities = 594/600 (99%), Gaps = 1/600 (0%)
Strand = Plus / Minus
Query: 5 gaattcatatttttctctatagactatctttggtaagaattaacaaaaccacacactgtt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gaattcatatttttct-tatagactatctttggtaagaattaacaaaaccacacactgtt 745
Query: 65 tatcatctatgttgctcaaatagcaactacaatataataaccctcctttaatacttttga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tatcatctatgttgctcaaatagcaactacaatataataaccctcctttaatacttttga 685
Query: 125 gagcttcagaaaatatgagaaagctgatcatacagatttgcccatcacctcagcatgaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gagcttcagaaaatatgagaaagctgatcatacagatttgcccatcacctcagcatgaag 625
Query: 185 gtcgtcttcatgctcaaccagagcatgggcaaatcacctttattttcttattttaacatc 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtcatcttcatgctcaaccagagcatgggcaaatcacctttattttcttattttaacatc 565
Query: 245 ctggattttgggttacactggagttcaagtacaaggtcccacctgaaacaagtgctgctc 304
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 564 ctggattttgggttacactggagttcaagtacaaggtcccagctgaaacaagtgctgctc 505
Query: 305 atattttaaaaaaatgtagatttagtataataaacaaaaacaaaaccctttcgttagaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atattttaaaaaaatgtagatttagtataataaacaaaaacaaaaccctttcgttagaat 445
Query: 365 ataggaaggagtaaggttaaacaaagaatgaagcacaatattcaatagccagataagcag 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataggaagaagtaaggttaaacaaagaatgaagcacaatattcaatagccagataagcag 385
Query: 425 agttttgatcgtctttcatattaaattactaagaagaggagaaggcaaagttctttaaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agttttgatcgtctttcatattaaattactaagaagaggagaaggcaaagttctttaaat 325
Query: 485 gcagaaggtgcctgcaggcagttacatttcaaagctatggcattcattcaaaaggtccat 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcagaaggtgcctgcaggcagttacatttcaaagctatggcattcattcaaaaggtccac 265
Query: 545 ttaactagaagtaatggtatgaagagaaagaccgaggagcaaaatgatgtagtatatctt 604
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 ttaactagaagtaatggtatgaagagaaagacagaggagcaaaatgatgtagtatatctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1004
Length adjustment: 10
Effective length of query: 595
Effective length of database: 994
Effective search space: 591430
Effective search space used: 591430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_o03.g1 MSMg01no375_o03.g1 CHROMAT_FILE:
MSMg01no375_o03.g1 PHD_FILE: MSMg01no375_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:37 2005
(562 letters)
>mm_chr8_62063564_62064525
Length = 962
Score = 772 bits (399), Expect = 0.0
Identities = 463/489 (94%), Gaps = 10/489 (2%)
Strand = Plus / Plus
Query: 1 tcttaattctcaacagttacaaatcacttatatattggagaaaatcctgttactttagat 60
||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 201 tcttaattcacaacagttacaaatcaattatatattggagaaaatcctattactttagat 260
Query: 61 tactgacataaataaattgctactaggtaggtggcaagttctcaattcactataatacaa 120
|||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct: 261 tactgacataaataaattactactatgtaggtggcaagttctcaattcactatagtacaa 320
Query: 121 ataagctttaaatatgcagttataaatcatttcattttatataaacatattgagccttaa 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ataagctttaaatatgcagttacaaatcatttcattttatataaacatattgagccttga 380
Query: 181 aataattaaaatatttaaatatacttacagcaacttctcataaggatttttaataaaaca 240
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 aataattaaaatatttaaatatacttatggcaacttctcataaggatttttaataaaaca 440
Query: 241 taattacatgaaataatacttatgctactaaataatgtttaacagaaataatgattactt 300
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 441 taattacatgaaataatacttatgctacaaaataatgtttaacagaaaaaatgattactt 500
Query: 301 ccaagaatccttttagttggctcctacaaaattattagtaactaaatt-aagagttcata 359
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 501 ccaagaatccttttagttggctcctacaaaattcttagtaactaaattgaa-agttcata 559
Query: 360 acgacataatatgccacaattccatttggccccaagtaagtgaatatggtccaaatagaa 419
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atggcataatatgccacaattccatttggccccaagtaagtgaatatggtccaaatagaa 619
Query: 420 aaatcaaagaggttacataaacaggttacacacacacacacacacacacacacacacata 479
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 620 aaatcaaagaggttacgtaaacaggttacacacacacacacacacacaca--------ta 671
Query: 480 tatatatat 488
|||||||||
Sbjct: 672 tatatatat 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
