BAC Information

Click to search

BAC

Clone NameMSMg01-376B08
Chromosome8 (Build37)
Map Location 96,776,134 - 96,776,663
singlet/doubletsinglet
Overlap geneNup93
Upstream geneAU018778, Ces1, 2310039D24Rik, Ces7, Gnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, LOC100041555
Downstream geneSlc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376B08.T7 (MSMg01no376_b08.b1)MSMg01-376B08.TJ (MSMg01no376_b08.g1)
ACCAG481485AG481486
length754816
length of high quality
(start - end)		548 (42 - 589)---
definitionCHROMAT_FILE: MSMg01no376_b08.b1 PHD_FILE: MSMg01no376_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:53 2005CHROMAT_FILE: MSMg01no376_b08.g1 PHD_FILE: MSMg01no376_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAACTCCTGTCTCCTAGAAGTAAGTAATCTTGCTGTAGATGATTTTTTTT
CTTATATTATTCTAGAATACAGGCAAAGTTGAGAGCTTTGTCTGTGTCTT
TAAAATTCAAACACATATAATACCCTTAGGCAGCCAAATCATATTATACG
ATACAAGATTTCAACATTCCGGCACATTGCCAAAGCTTAATGGCCACTTA
GACACAAAGTAAGGAAATGAGTCTGCATTAAGTCAGCAATCAATAGTCCA
GTATTACAGTAAAGATGTGATGTGCCCTTTAAATTGCTTCTAGCATCATC
CTTCTAACTCAAGCTCAGCTTCCAAAAAAAAAAAAAAAAAAAAGATTCAA
ACAAGAAGAGATATGCAACCTACTCTGCACAAAAACAAAACTTGGCATTT
TGAACCAGAAGTTGCTCCTGGATTACACACAAGTCTTACTGGGCACCTAT
AGGACAGCAGGCTGAGAAATAACAGGCTGTGCTTTGGACAGTAAATTAAC
TGACAGCTCAGCAAGCAGAAAATAATAGGCAGGCAGCCACACCTAGAGTG
TGAATGAAAGGATTTGGTCTTCCTGCAACTCCTCTCTCCCCGCATCCAGC
AGGGCTTTGCATCAAGGGTTAGTTGTCCGGCTTTTTACTCCTTCAACATT
ATTTTACAATAAGCCCCCCCAAAGTGAGCAACATTTACACATTCTTTTCC
AAGG

CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATTGTAACTAAGGATTACTTAGCAA
AATCTCTCTCTCTCTCTTGTCTCGTCTCTCTCTGTTCGTCGTCTCGCATC
TCCGTACCTCCACCCCCCCCCACCCCCTCCCCCCCTCCCCCCCCCCTCCC
CACCCCCCCCCTCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCTCCCCTCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCC
CCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCATCCCC
CCCCTCCCCCCCCCACTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTC
CCACCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCTCCCCCCCCACTCCT
CCCCCCCCCACCCCCCACTCCCCCACCCCCCCCCCCTCCCCTCCCCCCCC
CCCCCCCCCCCAACCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCA
TCCCCCTCCCCCCACACCCCCCCCACCCCCTCTCCCCCCCCATTNTCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCTCCCCCCCCCTATCCCCC
CACCTCCCCCCCCCCCCCCTCAACCCCACCCCCCAACCCCCACCCCCCAC
CCCCCANATGCACCCCCCCTCCCCCCCCCTCCACCCCTTATCCCCCCCCC
CCCCCCTTCTCACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_b08.b1 MSMg01no376_b08.b1 CHROMAT_FILE:
MSMg01no376_b08.b1 PHD_FILE: MSMg01no376_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:53 2005
         (548 letters)



>mm_chr8_96776134_96777079
          Length = 946

 Score =  988 bits (511), Expect = 0.0
 Identities = 528/537 (98%), Gaps = 8/537 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaactcctgtctcctagaagtaagtaatcttgctgtagatga-ttttttttctta 63
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 530 gaattcaactcctgtctcctagaagtaagtaatcttgctgtagatgatttttttttctta 471

                                                                       
Query: 64  tattattctagaatacaggcaaagttgagagctttgtctgtgtctttaaaattcaaacac 123
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ---tattctagaatacaggcaaagttgagagctttgtctgtgtctttaaaattcaaacac 414

                                                                       
Query: 124 atataatacccttaggcagccaaatcatattatacgatacaagatttcaacattccggca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atataatacccttaggcagccaaatcatattatacgatacaagatttcaacattccggca 354

                                                                       
Query: 184 cattgccaaagcttaatggccacttagacacaaagtaaggaaatgagtctgcattaagtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cattgccaaagcttaatggccacttagacacaaagtaaggaaatgagtctgcattaagtc 294

                                                                       
Query: 244 agcaatcaatagtccagtattacagtaaagatgtgatgtgccctttaaattgcttctagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agcaatcaatagtccagtattacagtaaagatgtgatgtgccctttaaattgcttctagc 234

                                                                       
Query: 304 atcatccttctaactcaagctcagcttccaaaaaaaaaaaaaaaaaaaagattcaaacaa 363
           |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||
Sbjct: 233 atcatccttctaactcaagctcagcttcc----aaaaaaaaaaaaaaaagattcaaacaa 178

                                                                       
Query: 364 gaagagatatgcaacctactctgcacaaaaacaaaacttggcattttgaaccagaagttg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gaagagatatgcaacctactctgcacaaaaacaaaacttggcattttgaaccagaagttg 118

                                                                       
Query: 424 ctcctggattacacacaagtcttactgggcacctataggacagcaggctgagaaataaca 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 117 ctcctggattacacacaagtcttactgggcacctataggacagcaggctgagaaataata 58

                                                                    
Query: 484 ggctgtgctttggacagtaaattaactgacagctcagcaagcagaaaataataggca 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  ggctgtgctttggacagtaaattaactgacagctcagcaagcagaaaataataggca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 946
Length adjustment: 10
Effective length of query: 538
Effective length of database: 936
Effective search space:   503568
Effective search space used:   503568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |