Query= MSMg01no376_i03.b1 MSMg01no376_i03.b1 CHROMAT_FILE:
MSMg01no376_i03.b1 PHD_FILE: MSMg01no376_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:25 2005
(648 letters)
>mm_chr8_61152329_61153376
Length = 1048
Score = 903 bits (467), Expect = 0.0
Identities = 514/537 (95%), Gaps = 14/537 (2%)
Strand = Plus / Minus
Query: 122 agaccaacccaaatgtaaatattgactcactaagactctcttccaagataattctaggtt 181
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1048 agaccaacccaaatgtaaatattgactcactaggactctcttccaagataattctaggtt 989
Query: 182 ctctgaagctgacaattagaactaacagtcactttactcactgctggtattttact---- 237
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 988 ctctgaagctgacaattagaactaacagtcacattactcactgctggtattttactctct 929
Query: 238 --------ctctataatatagccatttctaaaatgttgtagcattagattaatataatat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 ataatatactctataatatagccatttctaaaatgttgtagcattagattaatataatat 869
Query: 290 gtggccctttcagactggcttctgctttgcatgacctgatagctcatttctactcatctt 349
||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||
Sbjct: 868 gtggccctttcagactgtcttctgctttgcatgaaatgatagctcatttctattcatctt 809
Query: 350 ttgtccccatataccataaactaagtccagtccacttattggtgaaggtgtaagttgcgt 409
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 808 ttgtccccatatgccataaactaagtccagtccacttattggtgaaggtgtaagttgctt 749
Query: 410 ctaaggcccagtgattatgagtagagctgccataaatgtgaatatgtaggatttgcggtc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ctaaggcccagtgattatgagtagagctgccataaatgtgaatatgtaggatttgcggtc 689
Query: 470 agcatctgtttcaatcctcttggtaaatataaagataacatctggggcaaaatatttagc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agcatctgtttcaatcctcttggtaaatataaagataacatctggggcaaaatatttagc 629
Query: 530 tgtgacagaagaccaaactgcttcacaaagtgagcatcatagaggccccgactgtggtaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgtgacagaagaccaaactgcttcacaaagtgagcatcatagaggccccgactgtggtaa 569
Query: 590 ctggagattcttgcgtttttctaccatttaatgatng-tacttgtgtatgtgtgtgt 645
||||||||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct: 568 ctggagattcttgcgtttttctaccatttaatgat-gttatttgtgtatgtgtgtgt 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_i03.g1 MSMg01no376_i03.g1 CHROMAT_FILE:
MSMg01no376_i03.g1 PHD_FILE: MSMg01no376_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:25 2005
(594 letters)
>mm_chr8_61011828_61012821
Length = 994
Score = 1133 bits (586), Expect = 0.0
Identities = 592/594 (99%)
Strand = Plus / Plus
Query: 1 catccattactgaccaaaataattgccttaataattttggagaacagtttggtagagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccattactgaccaaaataattgccttaataattttggagaacagtttggtagagctt 260
Query: 61 atgaaatgtcttccttaaacatacaaatgtattagctgatatattcctaataaaatattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaaatgtcttccttaaacatacaaatgtattagctgatatattcctaataaaatattg 320
Query: 121 tgtctggcccatggccatacataaaaattgtttatagatagattatacattataactgca 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctggcccatggccacacataaaaattgtttatagatagattatacattataactgca 380
Query: 181 atatagaaaacatccaaatacccagaaatagaatgttgtagaaaattaaacaacataaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatagaaaacatccaaatacccagaaatagaatgttgtagaaaattaaacaacataaat 440
Query: 241 atgaatcaattggttttgcaagttgacaataattaatttggaaaataattgggaatggaa 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 atgaatcaattggttttgcaagttgacaataattaattttgaaaataattgggaatggaa 500
Query: 301 aataaaaatcattgggcataatttgaggttaaatatatttcaaatgcaagaaacatcata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataaaaatcattgggcataatttgaggttaaatatatttcaaatgcaagaaacatcata 560
Query: 361 acatgtttaatagtacagaaactctaatacatatggagaaatataagagagtaaataaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatgtttaatagtacagaaactctaatacatatggagaaatataagagagtaaataaaa 620
Query: 421 aaatttaaatgtttgaggagggacaatggaacattaggactggatttgacacataaaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatttaaatgtttgaggagggacaatggaacattaggactggatttgacacataaaagt 680
Query: 481 gtttatttaattttgagaatctattcatgtatgtttgaatgattttaaatgccttattta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttatttaattttgagaatctattcatgtatgtttgaatgattttaaatgccttattta 740
Query: 541 agatatatcaattctccaacaagccattaaagagccttaccattagtcatttaa 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agatatatcaattctccaacaagccattaaagagccttaccattagtcatttaa 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
