BAC Information

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BAC

Clone NameMSMg01-377C12
Chromosome8 (Build37)
Map Location 108,660,746 - 108,661,147
singlet/doubletsinglet
Overlap geneRbm35b
Upstream geneBC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3
Downstream geneLypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377C12.T7 (MSMg01no377_c12.b1)MSMg01-377C12.TJ (MSMg01no377_c12.g1)
ACCAG482304AG482305
length766785
length of high quality
(start - end)		401 (50 - 450)402 (81 - 482)
definitionCHROMAT_FILE: MSMg01no377_c12.b1 PHD_FILE: MSMg01no377_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:14 2005CHROMAT_FILE: MSMg01no377_c12.g1 PHD_FILE: MSMg01no377_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAGATACCCACCTATCTCTGACCCCTGAATGCTGGGATTA
AAGGTATGTACTACCATTGCCTGGCTTGTTTGTTTATTTTGAGAGAGAGA
GAGTCTCACTATACAGACCACACTGGCCTTGAACTCACAGACATCTGCCT
GCCTTTTTCCCCCAAATGTTAAGATTAAAGGCATGTACCATGTCACTTGG
CTAATCACAGGAGCTTTTGTGGCTCAAGAGGTCGTACAACCTGGATATAG
CCTCTGAAAAGAGTTGTTATCACTATCTGGCCCCAGAAGTCCCTATCTGT
CTCAGTCAGGGTTCTCTAGAGTCACAGAACTTATGGAATGTCTCTCTGTA
TTGAGGGAATTTATTGTGATGACTTACAGTCTGTAGACCAACTCCCCAAC
AATGGTCAGCTGTGAATGGGAAGTCCAAGAATCTAGTAGTTGCTCAGTCC
CACCAGGCTATCTGTCTCACCTGCTCTTCCCGTATAGTACCCTCCACTAG
ATATGCGTGCTACTACCGCTCCCATCTGGTCCACTAATCACCTACCCTTC
CTTTCTTCTTTGCCCTTACGTCCTTCCCCCCCACCCCCTGTTGTTTTCTT
TTCCCCTCCGTTTCCCTTCCTTCTTCTTTCTCCACCTTCCTTCTTTTCCC
TTTTTTCACCCCCCTCTTTCCCTCCCTTTTTCTTTCTTTTCCTTTTTCCC
TCCCCCTCCCCCTCCN

NTTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGGTCTTGCGTGACCCT
TGCAGAATGGAAAGAGGCCTCTGATCCTGCACATTCTTTTGCGGAGGACT
CAGAGTGCCTGCTAGAGAGGAAGTAGGAGAAAGAATGGATTCGTCCCAGG
AGTCTCGCCGGACTGCAGCAAGAGGTGGGACTCCAGCCGGCGAGCGCACG
CCTCGGCAGAAGTGAGCTCTTGCCTCCTGGGCAGGGTTTTGGCCCTCCCG
CGGGGTTCCCTGGGCCGTCCTGATCACGTGGCCTCTCCGGGCCGCAGGTA
ACTCGCCGGAGTAGGCAGGGATAGGCAGCCGCACCGCCCAGCCCCAAAGG
GCACCGCGGGCGGGTCTCTGCAGCTCCCACTACACCCGGCCGCAGGTGCC
GCCCCCAACACACCGGATCCCGCCCAAGCTCGTCTGTCTGCTGTCGGNCG
GCACGTGTGTGCGTCTCGTCTGTCCGCGCGCGTGGCTTGTATGCCCCCCT
CCTCTGTGGTTTTGTAATTTGTCGCCCCCGGCCGTCCCCACCCCTTGGGC
CTGTAACCTTTTTTGACAATTTTTCCCTATACATTTGCCCCCGGACCCCC
TTTTTTTTTCCCTGCCCCTTCTTTTTTCACCCTCCTTTTTTTTTTATCTT
CACTTATACCCGTTTTTTTTCTCTCCTTGCGACCCCCCTCTTCCTTCTTT
TCCTCTTTTTTTTCTATTTCTTTCCCCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_c12.g1 MSMg01no377_c12.g1 CHROMAT_FILE:
MSMg01no377_c12.g1 PHD_FILE: MSMg01no377_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:15 2005
         (402 letters)



>mm_chr8_108660546_108661347
          Length = 802

 Score =  770 bits (398), Expect = 0.0
 Identities = 401/402 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgggtcttgcgtgacccttgcagaatggaaagaggcctctgatcctgcacattctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 catgggtcttgcgtgacccttgcagaatggaaagaggcctctgatcctgcacattctttt 543

                                                                       
Query: 61  gcggaggactcagagtgcctgctagagaggaagtaggagaaagaatggattcgtcccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gcggaggactcagagtgcctgctagagaggaagtaggagaaagaatggattcgtcccagg 483

                                                                       
Query: 121 agtctcgccggactgcagcaagaggtgggactccagccggcgagcgcacgcctcggcaga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 482 agtctcgccggactgcagcaagaggtgggactccagccggcgagcgcacgcctcagcaga 423

                                                                       
Query: 181 agtgagctcttgcctcctgggcagggttttggccctcccgcggggttccctgggccgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agtgagctcttgcctcctgggcagggttttggccctcccgcggggttccctgggccgtcc 363

                                                                       
Query: 241 tgatcacgtggcctctccgggccgcaggtaactcgccggagtaggcagggataggcagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgatcacgtggcctctccgggccgcaggtaactcgccggagtaggcagggataggcagcc 303

                                                                       
Query: 301 gcaccgcccagccccaaagggcaccgcgggcgggtctctgcagctcccactacacccggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gcaccgcccagccccaaagggcaccgcgggcgggtctctgcagctcccactacacccggc 243

                                                     
Query: 361 cgcaggtgccgcccccaacacaccggatcccgcccaagctcg 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cgcaggtgccgcccccaacacaccggatcccgcccaagctcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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