MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-377C16
Chromosome	8 (Build37)
Map Location	46,927,338 - 46,927,627
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2
Downstream gene	Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100039508 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039508
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 19 Proteins

name	Fat1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14107 MGI:109168
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039673 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039673
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Mtnr1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17773 MGI:102967
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG622523 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622523 MGI:3646898
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	F11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109821 MGI:99481
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Klkb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16621 MGI:102849
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cyp4v3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102294 MGI:2142763
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC035537 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212326 MGI:2387177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tlr3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:142980 MGI:2156367
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sorbs2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234214 MGI:1924574
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pdlim3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53318 MGI:1859274
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc110 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212392 MGI:2685018
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700029J07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69479 MGI:1916729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1810047C23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192169 MGI:1913679
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankrd37 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:654824 MGI:3603344
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrp2bp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67620 MGI:1914870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snx25 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102141 MGI:2142610
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933411K20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66756 MGI:1914006
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc25a4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11739 MGI:1353495
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC621269 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621269
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 1059 ESTs, 41 Proteins pseudo : _no_value

name	LOC100039875 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039875
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 mRNAs, 234 ESTs, 22 Proteins

name	LOC667325 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667325
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Helt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234219 MGI:3040955
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667337 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667337
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs

name	Acsl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14081 MGI:102797
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mlf1ip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71876 MGI:1919126
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc111 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:408022 MGI:3603756
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Casp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12367 MGI:107739
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Irf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16363 MGI:96591
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039508 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258728 GeneID:100039508
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 19 Proteins product : similar to cyclic nucleotide gated channel beta 1 transcript_id : XM_001473026.1

name	Fat1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486854 GeneID:14107 MGI:109168
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FAT tumor suppressor homolog 1 (Drosophila) transcript_id : NM_001081286.1

name	LOC100039673 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258732 GeneID:100039673
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100039673 transcript_id : XM_001473124.1

name	Mtnr1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893187 GeneID:17773 MGI:102967
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : melatonin receptor 1A transcript_id : NM_008639.2

name	EG622523 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149258734 GeneID:622523 MGI:3646898
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : predicted gene, EG622523 transcript_id : XM_897153.3

name	F11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21312499 GeneID:109821 MGI:99481
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coagulation factor XI transcript_id : NM_028066.1

name	Klkb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680583 GeneID:16621 MGI:102849
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kallikrein B, plasma 1 transcript_id : NM_008455.1

name	Cyp4v3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129905 GeneID:102294 MGI:2142763
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytochrome P450, family 4, subfamily v, polypeptide 3 transcript_id : NM_133969.2

name	BC035537 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922688 GeneID:212326 MGI:2387177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC035537 transcript_id : NM_153535.2

name	Tlr3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227205 GeneID:142980 MGI:2156367
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : toll-like receptor 3 transcript_id : NM_126166.3

name	Sorbs2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124301205 GeneID:234214 MGI:1924574
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sorbin and SH3 domain containing 2 transcript_id : NM_172752.3

name	Pdlim3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892778 GeneID:53318 MGI:1859274
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PDZ and LIM domain 3 transcript_id : NM_016798.3

name	Ccdc110 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377416 GeneID:212392 MGI:2685018
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 110 transcript_id : NM_001033246.2

name	1700029J07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388130 GeneID:69479 MGI:1916729
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700029J07 gene transcript_id : NM_001033148.2

name	1810047C23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:20149753 GeneID:192169 MGI:1913679
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1810047C23 gene transcript_id : NM_138668.1

name	Ankrd37 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88319965 GeneID:654824 MGI:3603344
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 37 transcript_id : NM_001039562.1

name	Lrp2bp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326493 GeneID:67620 MGI:1914870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Lrp2 binding protein transcript_id : NM_026278.3

name	Snx25 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75832038 GeneID:102141 MGI:2142610
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sorting nexin 25 transcript_id : NM_207213.1

name	4933411K20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361488 GeneID:66756 MGI:1914006
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933411K20 gene transcript_id : NM_025747.3

name	Slc25a4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365551 GeneID:11739 MGI:1353495
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 transcript_id : NM_007450.3

name	LOC100039875 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258743 GeneID:100039875
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 mRNAs, 234 ESTs, 22 Proteins product : similar to LOC654472 protein transcript_id : XM_001473650.1

name	Helt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46048389 GeneID:234219 MGI:3040955
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Hey-like transcription factor (zebrafish) transcript_id : NM_173789.4

name	LOC667337 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94383451 GeneID:667337
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs product : hypothetical LOC667337 transcript_id : XM_989927.1

name	Acsl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75992918 GeneID:14081 MGI:102797
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA synthetase long-chain family member 1 transcript_id : NM_007981.3

name	Mlf1ip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388070 GeneID:71876 MGI:1919126
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myeloid leukemia factor 1 interacting protein transcript_id : NM_027973.3

name	Ccdc111 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47564099 GeneID:408022 MGI:3603756
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 111 transcript_id : NM_001001184.1

name	Casp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129865 GeneID:12367 MGI:107739
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : caspase 3 transcript_id : NM_009810.2

name	Irf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363638 GeneID:16363 MGI:96591
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interferon regulatory factor 2 transcript_id : NM_008391.3

name	LOC100039508 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258729 GeneID:100039508
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473076.1

name	Fat1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486855 GeneID:14107 MGI:109168
definition	GO_component : GO:0030054 - cell junction [Evidence IDA]; GO:0030175 - filopodium [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0030027 - lamellipodium [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007015 - actin filament organization [Evidence IMP]; GO:0016337 - cell-cell adhesion [Evidence IMP]; GO:0007163 - establishment and/or maintenance of cell polarity [Evidence IMP]; GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 note : fat 1 cadherin; fat tumor suppressor homolog product : FAT tumor suppressor homolog 1 protein_id : NP_001074755.1

name	LOC100039673 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258733 GeneID:100039673
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473174.1

name	Mtnr1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678954 CCDS:CCDS22273.1 GeneID:17773 MGI:102967
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0008502 - melatonin receptor activity [Evidence TAS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007623 - circadian rhythm [Evidence TAS]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : Mel1a receptor product : melatonin receptor 1A protein_id : NP_032665.1

name	EG622523 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94383450 GeneID:622523 MGI:3646898
definition	codon_start : 1 product : hypothetical protein protein_id : XP_902246.2

name	F11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312500 CCDS:CCDS22274.1 GeneID:109821 MGI:99481
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0003805 - coagulation factor XIa activity [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0007596 - blood coagulation [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : plasma thromboplastin antecedent product : coagulation factor XI protein_id : NP_082342.1

name	Klkb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680584 CCDS:CCDS22275.1 GeneID:16621 MGI:102849
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0003807 - plasma kallikrein activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0007596 - blood coagulation [Evidence IEA]; GO:0042730 - fibrinolysis [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : antigen, prostate specific; kallikrein 3, plasma product : kallikrein B, plasma 1 protein_id : NP_032481.1

name	Cyp4v3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527190 CCDS:CCDS22276.1 GeneID:102294 MGI:2142763
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0004497 - monooxygenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006118 - electron transport [Evidence IEA] codon_start : 1 note : cytochrome P450, 4v3 product : family 4 cytochrome P450 protein_id : NP_598730.1

name	BC035537 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956296 CCDS:CCDS22277.1 GeneID:212326 MGI:2387177
definition	GO_function : GO:0005529 - sugar binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC212326 protein_id : NP_705763.1

name	Tlr3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543872 CCDS:CCDS22278.1 GeneID:142980 MGI:2156367
definition	GO_component : GO:0016020 - membrane [Evidence ISS] [Evidence IEA] GO_function : GO:0003725 - double-stranded RNA binding [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence ISS] [Evidence IEA] GO_process : GO:0007250 - activation of NF-kappaB-inducing kinase [Evidence ISS]; GO:0006952 - defense response [Evidence IMP]; GO:0009597 - detection of virus [Evidence ISS]; GO:0006972 - hyperosmotic response [Evidence ISS]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA]; GO:0045671 - negative regulation of osteoclast differentiation [Evidence ISS]; GO:0043123 - positive regulation of I-kappaB kinase/NF-kappaB cascade [Evidence IDA] [Evidence IGI]; GO:0045356 - positive regulation of interferon-alpha biosynthesis [Evidence ISS]; GO:0045359 - positive regulation of interferon-beta biosynthesis [Evidence ISS]; GO:0045078 - positive regulation of interferon-gamma biosynthesis [Evidence ISS]; GO:0046330 - positive regulation of JNK cascade [Evidence IDA]; GO:0009615 - response to virus [Evidence IMP] codon_start : 1 product : toll-like receptor 3 protein_id : NP_569054.2

name	Sorbs2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124301206 GeneID:234214 MGI:1924574
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : Arg/Abl-interacting protein ArgBP2 product : sorbin and SH3 domain containing 2 protein_id : NP_766340.3

name	Pdlim3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7948997 CCDS:CCDS22281.1 GeneID:53318 MGI:1859274
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IPI]; GO:0030018 - Z disc [Evidence TAS] GO_function : GO:0008092 - cytoskeletal protein binding [Evidence IPI]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence TAS]; GO:0008307 - structural constituent of muscle [Evidence TAS] [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007015 - actin filament organization [Evidence IDA]; GO:0007507 - heart development [Evidence IMP]; GO:0007519 - striated muscle development [Evidence IMP] codon_start : 1 note : actinin alpha 2 associated LIM protein product : PDZ and LIM domain 3 protein_id : NP_058078.1

name	Ccdc110 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701744 CCDS:CCDS22282.1 GeneID:212392 MGI:2685018
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : coiled-coil domain containing 110 protein_id : NP_001028418.1

name	1700029J07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677532 CCDS:CCDS22283.1 GeneID:69479 MGI:1916729
definition	codon_start : 1 product : hypothetical protein LOC69479 protein_id : NP_001028320.1

name	1810047C23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20149754 CCDS:CCDS22284.1 GeneID:192169 MGI:1913679
definition	codon_start : 1 product : Ufm1-specific protease 2 protein_id : NP_619609.1

name	Ankrd37 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88319966 CCDS:CCDS22285.1 GeneID:654824 MGI:3603344
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : ankyrin repeat domain 37 protein_id : NP_001034651.1

name	Lrp2bp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312872 CCDS:CCDS22286.1 GeneID:67620 MGI:1914870
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] codon_start : 1 note : megalin-binding protein product : LRP2 binding protein protein_id : NP_080554.1

name	Snx25 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75832039 CCDS:CCDS22287.1 GeneID:102141 MGI:2142610
definition	GO_function : GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 exception : mismatches in translation product : sorting nexin 25 protein_id : NP_997096.1

name	4933411K20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385210 CCDS:CCDS22288.1 GeneID:66756 MGI:1914006
definition	codon_start : 1 product : hypothetical protein LOC66756 protein_id : NP_080023.1

name	Slc25a4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91680541 GeneID:11739 MGI:1353495
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA] [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006839 - mitochondrial transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : adenine nucleotide translocator 1, skeletal muscle; adenine nucleotide translocase-1 product : solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 protein_id : NP_031476.2

name	LOC100039875 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258744 GeneID:100039875
definition	codon_start : 1 product : similar to LOC654472 protein protein_id : XP_001473700.1

name	Helt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982939 CCDS:CCDS22290.1 GeneID:234219 MGI:3040955
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0030182 - neuron differentiation [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : Heslike; bHLH transcription factor megane; mesencephalic GABAergic neurons enhancer of split related protein product : Hey-like transcription factor protein_id : NP_776150.2

name	LOC667337 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94383452 GeneID:667337
definition	codon_start : 1 product : hypothetical protein protein_id : XP_995021.1

name	Acsl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560705 CCDS:CCDS22291.1 GeneID:14081 MGI:102797
definition	EC_number : 6.2.1.3 GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0004467 - long-chain-fatty-acid-CoA ligase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : acetyl-Coenzyme A synthetase; acetyl-Coenzyme A synthetase 1 (ADP forming); acetyl-CoA synthetase; acetate-CoA ligase; fatty acid Coenzyme A ligase, long chain 2 product : acyl-CoA synthetase long-chain family member 1 protein_id : NP_032007.2

name	Mlf1ip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47523382 CCDS:CCDS22292.1 GeneID:71876 MGI:1919126
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000775 - chromosome, pericentric region [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : MLF1-interacting protein product : myeloid leukemia factor 1 interacting protein protein_id : NP_082249.1

name	Ccdc111 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47564100 GeneID:408022 MGI:3603756
definition	codon_start : 1 product : coiled-coil domain containing 111 protein_id : NP_001001184.1

name	Casp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753284 CCDS:CCDS22294.1 GeneID:12367 MGI:107739
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0030693 - caspase activity [Evidence IMP] [Evidence IDA]; GO:0004861 - cyclin-dependent protein kinase inhibitor activity [Evidence IMP]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IMP] [Evidence IDA] GO_process : GO:0006915 - apoptosis [Evidence IMP]; GO:0001782 - B cell homeostasis [Evidence IMP]; GO:0045165 - cell fate commitment [Evidence IMP]; GO:0006309 - DNA fragmentation during apoptosis [Evidence IMP]; GO:0007507 - heart development [Evidence IGI]; GO:0006917 - induction of apoptosis [Evidence IMP] [Evidence IDA] [Evidence IGI]; GO:0008631 - induction of apoptosis by oxidative stress [Evidence IDA]; GO:0008625 - induction of apoptosis via death domain receptors [Evidence IMP]; GO:0030216 - keratinocyte differentiation [Evidence IMP]; GO:0046007 - negative regulation of activated T cell proliferation [Evidence IMP]; GO:0030889 - negative regulation of B cell proliferation [Evidence IMP]; GO:0045736 - negative regulation of cyclin-dependent protein kinase activity [Evidence IMP]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IMP]; GO:0001836 - release of cytochrome c from mitochondria [Evidence IGI]; GO:0009411 - response to UV [Evidence IGI]; GO:0009611 - response to wounding [Evidence IDA]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0043029 - T cell homeostasis [Evidence IMP] codon_start : 1 product : caspase 3, apoptosis related cysteine protease protein_id : NP_033940.1

name	Irf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982243 CCDS:CCDS22295.1 GeneID:16363 MGI:96591
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : interferon regulatory factor 2 protein_id : NP_032417.2

name	LOC667325 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667325
definition	number : 1 pseudo : _no_value

name	LOC621269 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149258742 GeneID:621269
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 1059 ESTs, 41 Proteins product : similar to beta-actin pseudo : _no_value transcript_id : XR_031311.1

clone name	MSMg01-047H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046L19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-048C12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-306F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110E05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-064P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-213K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507D01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-153J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146C22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-528G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135N03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-291B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201F06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146D24
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-377C16.T7 (MSMg01no377_c16.b1)	MSMg01-377C16.TJ (MSMg01no377_c16.g1)
ACC	AG482312	AG482313
length	788	750
length of high quality (start - end)	288 (73 - 360)	428 (82 - 509)
definition	CHROMAT_FILE: MSMg01no377_c16.b1 PHD_FILE: MSMg01no377_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:15 2005	CHROMAT_FILE: MSMg01no377_c16.g1 PHD_FILE: MSMg01no377_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:15 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TTGAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XCGCGGAATTCTTCTCTCCTAGTTGCTTTATGAACAGTATGGGGGGGGGT TAAAAAAGAAATATATGACAGGAGTTTCTAAGGGAAGAAAAAGATATTAC AGAGAACCACAAATGTGAAGTCACCTGTAGGTGATGAAAGGCAGGTTACC ATGAGTGTGGCCTTCACTTTGAAGGCAACGACAACTACCCCACTTCTTCA ACTTATAGTGACATGAATGTGTCATATTTGTCTTGTAGGAGCTTATGCAT GACAGGTTGGTTCTGATAGCCTTTATTTACTTATAGATAATTTCTGACCT AGTTCACACCCATAATCAATAGCCTATCCATGATTGTTTGTTCAGTCAAA TTTGACGTGGCACAAAGGACTAAATTTTGATGCTCACGTTTCATGTTGTA GGCCATTTTACCAGGAATTTTTTACTTGTCTAGACAGTTCCGTGTTTCAC GCCTCTTTCTTTCCTTACCGCATTGTGCGCTTTTTCTTTCCCCTTTTTTG TTTCCTACTTTCTTTCCTTTCGTCCTACTTTTCTTCCTTATCCCCCTTCC CCTTTTTTTCTTATTTCTCGCTTTTCCTTACTTTGTTTTTCCCCACACTT TTCATTCCTTTTCGCATTCCGTTTCCCTTCCTATCTTTTATTCTCCTCCT TTATTTTTTTTTCCCTCTTTATTCCCCGCCTCCTTTTCCCCCCCTTTTTC TTTTCCCCCCCCCTATTTCCGATACCTCCTCTCTTCCC	NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAA TGGCTGAGAAGCACCTGAAAAAAATGTTCAGCGTCCTTAATCATCAGAGA AATGCAAATCAAAACAACCTTGAGATTCCACCTCACACCAGTCAGAATGG CTAAGATCAAAAATTCAGGTGACAACAGATGCTGGCGAGGATGTGGAGAA AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT CTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGG AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACA GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT AGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTANNAAG AATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGTAAGGGATCAT CCTGAGTGAGGAAACACTTTCTCTAAGGAACTCACCCATATGGACTCCCT GAATAGGGAAATTAACCCCAGAAATTAGGATACCCCCAATTTTAAATAAA TTTTGCTAACCGCTTGTGACTCCTTAATAATGATAAACATCCCGTGGTTA
quality values	Open. Hide. 16 21 11 11 9 9 9 10 10 11 11 11 13 12 13 24 22 21 21 21 16 19 25 21 22 10 10 10 23 28 48 23 22 21 15 10 8 10 8 10 10 10 10 12 21 24 19 19 27 28 28 31 34 47 44 19 18 12 15 14 18 33 27 23 10 10 10 10 10 16 11 12 18 21 32 32 39 41 41 39 39 39 32 32 37 37 37 37 47 50 50 50 59 59 59 59 59 59 59 59 59 59 57 57 57 59 59 59 50 50 50 50 50 40 57 57 50 48 48 50 50 48 54 54 54 54 57 57 57 57 57 68 59 59 46 47 43 43 47 57 57 48 48 41 41 41 48 57 57 57 57 57 57 57 68 68 57 57 47 43 41 57 57 57 50 50 57 57 68 68 68 57 57 54 57 57 57 57 50 52 52 52 57 57 57 57 52 54 52 59 59 59 59 59 57 59 59 57 57 54 54 52 57 52 43 43 52 57 57 57 57 57 59 57 52 52 57 57 57 57 57 52 50 50 59 68 68 68 68 57 57 57 57 57 57 59 59 59 59 59 59 57 57 59 59 59 59 59 59 57 57 57 57 59 59 47 42 35 35 35 42 42 47 47 57 57 57 48 44 44 44 47 47 48 48 59 48 48 48 48 59 59 48 48 36 37 23 20 20 28 28 35 47 43 59 42 37 32 28 28 32 24 20 20 20 28 28 19 18 12 15 28 32 34 47 37 32 24 23 14 12 18 12 11 11 11 25 25 37 39 36 36 32 34 28 28 23 28 25 37 32 28 33 30 30 21 21 11 11 11 13 18 32 28 28 32 30 30 30 15 13 8 8 8 10 12 11 11 11 11 11 12 18 19 19 24 22 24 20 20 20 19 21 20 23 22 28 30 30 24 24 15 10 9 9 9 9 9 16 22 17 18 19 18 15 14 12 16 12 12 12 11 11 11 11 11 15 15 15 21 18 14 13 13 16 27 23 22 18 9 8 8 12 10 13 11 12 12 22 23 18 11 10 10 8 10 9 11 11 10 10 18 12 16 13 13 11 13 16 12 12 12 12 12 13 11 11 11 11 10 10 11 11 11 11 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 9 9 8 8 8 8 8 8 8 8 8 8 11 12 12 15 18 12 13 8 8 8 8 8 8 10 12 11 10 10 10 8 6 8 6 6 10 6 6 8 8 10 8 8 8 8 12 16 24 16 10 10 8 8 8 8 9 6 8 6 6 8 10 10 8 8 8 8 12 12 14 14 14 14 15 17 14 9 9 6 6 6 6 8 8 8 6 6 8 7 8 8 11 11 11 10 12 12 10 10 10 17 18 16 14 10 10 10 10 11 11 9 9 9 9 9 12 8 8 8 8 10 10 14 7 11 6 6 6 6 8 8 13 10 10 11 8 6 6 6 8 8 21 12 12 10 12 11 9 12 12 13 17 10 11 11 21 13 15 21 17 11 10 8 8 11 10 12 12 19 13 10 9 9 8 8 10 8 8 8 8 8 17 19 30 30 28 24 20 8 8 8 8 8 13 13 7 7 6 6 6 11 17 15 14 11 10 12 15 15 13 6 6 6 10 10 13 16 13 8 8 7 7 7 11 21 22 11 13 9 7 6 8 8 8 11 6 6 6 6 8 8 8 8 12 9 11 11 15 15 15 14 18 15 20 23 20 10 15 11 11 12 9 17 17 13 13 12 11 18 10 8 8 6 6 6 10 12 11 8 6 6 6 6 8 8 10 10 8 10 7 6 8 8 11 11 11 11	Open. Hide. 0 0 0 0 3 6 6 10 10 10 9 9 9 8 8 8 11 10 17 15 27 25 30 20 28 20 19 17 17 25 25 29 32 27 21 25 15 14 12 15 11 12 15 19 10 14 14 23 25 37 37 31 32 30 30 28 28 30 37 37 59 59 34 25 15 12 9 9 12 12 14 25 41 59 59 29 29 28 28 36 36 47 50 47 47 37 42 47 40 40 40 47 42 42 50 50 54 54 48 53 54 68 68 68 68 68 68 68 68 68 68 68 68 68 51 68 68 68 68 68 68 50 48 46 46 46 48 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 48 46 46 46 48 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 52 57 59 57 52 43 52 59 59 59 68 68 68 68 68 68 68 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 57 57 59 50 53 50 57 57 57 59 59 59 50 50 50 47 50 47 59 44 39 39 37 37 39 44 44 41 42 50 50 50 50 48 48 48 48 48 48 48 48 59 59 59 59 59 50 41 41 40 39 37 37 32 31 27 32 32 36 28 34 34 41 40 41 39 39 35 28 28 39 59 59 37 41 32 30 18 21 17 17 19 22 37 36 36 32 26 26 28 24 28 20 15 12 13 16 19 21 31 24 28 18 16 11 20 20 32 32 27 29 29 32 37 37 35 39 39 40 37 34 30 25 25 31 31 34 23 23 3 0 0 3 17 22 26 20 26 28 18 18 17 17 21 28 30 34 16 13 11 10 8 9 13 17 10 8 8 8 8 8 8 11 12 14 15 14 14 13 15 12 6 10 6 6 6 6 6 8 8 15 19 15 16 12 21 21 31 23 21 12 12 11 13 8 8 8 8 8 8 8 8 8 8 9 13 12 10 10 8 8 9 9 9 8 8 8 6 6 6 7 10 12 10 10 13 13 12 15 11 12 10 8 8 8 8 8 8 8 8 9 12 11 11 11 11 12 10 10 10 11 10 7 6 6 6 6 10 11 8 6 6 6 10 8 8 8 8 12 17 12 9 9 9 12 10 10 10 10 9 9 9 8 8 8 8 10 8 13 10 10 8 8 8 8 8 8 9 8 10 7 7 6 8 10 8 8 6 6 6 6 6 6 6 8 10 8 8 8 8 8 8 8 9 10 13 10 8 8 8 8 8 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no377_c16.b1 MSMg01no377_c16.b1 CHROMAT_FILE:
MSMg01no377_c16.b1 PHD_FILE: MSMg01no377_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:15 2005
         (288 letters)



>mm_chr8_46927138_46927827
          Length = 690

 Score =  485 bits (251), Expect = e-141
 Identities = 280/291 (96%), Gaps = 4/291 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgctttatgaacagtatgggg---gggggttaaaaaagaaatatatgacaggagtttct 57
           |||||||||||||| |||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctttatgaaca-tatggggtgggggggttaaaaaagaaatatatgacaggagtttct 259

                                                                       
Query: 58  aagggaagaaaaagatattacagagaaccacaaatgtgaagtcacctgtaggtgatgaaa 117
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aagggaagaaagaggtattacagagaaccacaaatgtgaagtcacctgtaggtgatgaaa 319

                                                                       
Query: 118 ggcaggttaccatgagtgtggccttcactttgaaggcaacgacaactaccccacttcttc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggcaggttaccatgagtgtggccttcactttgaaggcaacgacaactaccccacttcttc 379

                                                                       
Query: 178 aacttatagtgacatgaatgtgtcatatttgtcttgtaggagcttatgcatgacaggttg 237
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 aacttatagtgacatgaatgtgtcacatttgtcttgtaggagcttatgcatgacaggttg 439

                                                              
Query: 238 gttctgatagcctttatttacttatagataatttctgacctagttcacacc 288
           ||||||||||||   |||||||||||||||||||||||| |||||||||||
Sbjct: 440 gttctgatagccaccatttacttatagataatttctgacatagttcacacc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 690
Length adjustment: 9
Effective length of query: 279
Effective length of database: 681
Effective search space:   189999
Effective search space used:   189999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information