BAC Information

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BAC

Clone NameMSMg01-377F12
Chromosome8 (Build37)
Map Location 107,277,262 - 107,277,499
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6
Downstream geneLOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377F12.T7 (MSMg01no377_f12.b1)MSMg01-377F12.TJ (MSMg01no377_f12.g1)
ACCAG482448AG482449
length775776
length of high quality
(start - end)		501 (47 - 547)240 (79 - 318)
definitionCHROMAT_FILE: MSMg01no377_f12.b1 PHD_FILE: MSMg01no377_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:29 2005CHROMAT_FILE: MSMg01no377_f12.g1 PHD_FILE: MSMg01no377_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTACAGTTCCTTTCAGTTTGTGGAATTCACAGGCAGTTTTTCCAA
GCAGAGCAATCCAGTGAGAAGCCAAGAGAAGCAAGTTTTAACCAATCAGC
TTGGGCAGGAGTTTTGAGCCAGAACAGCTGAATTGAACCAGCCAGCCGGA
GTTCAGAAAGAACTAGATAGGGTAAGTTTATTCAGCAGTAAGCCTCTGAG
ATGGCAGTCACAGCTGGCAAATAAGTTACTTTACAAGCGAAGTAAAGATC
AACAAACCCTTATTATCCAAATTAGATAAAGGTGGAGAGAGGATACCCAA
ATTAACAAAATTAGAAATGAAAGAGGAAACTTACCAACAGATGCTGGGAA
AATCCAGAGAATTATTAAAGACATACTATAGAAATCTATACTCTACCAAA
TTGGAAAAATCTAAAAGAGGTGGATAATTTTCTCAATGCATACCACTTAC
TCGTTAAATCAAGATCAGATAAGCACTTTAAACACACACACACACACACA
CACTCACACCCTCACACTCATACCTATACTCTCCCCCNTATTTTATTTAT
GAGAGGAAAGAGGCACGGAGTGCCATTTCATTCCCCCTTTTTCCTATATT
CCCCCACTTTTTCCCTTTTATCCCTTTTTTTCCCCTCCCCTTTTCTTTTC
CCCTACTCTCTCCCCAATACCCCCCCTTTTATCCTCCTTTCTTTTTCCCC
GTCCCTTCCTTTTTCCCCCTCCTTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTACTATGATAAGACAGATG
GAGCTCTGACGTTTTCAAATTGTATGCAGTTTCCAAACTATAGCATCTGA
AAGCAGTTGTTCTGGAACAGAGACCACACAGTGATTGACAAAAAGAATAA
TAGTGAAAGAAATAGTCTCATACTTAAGTGTAGGTGGTAGGAAAGTTCAT
ATTTTTATGCAAAATTTACTCATCTATGCTGGTAAATGAGCAAATTTGGA
TACATAGAAATCATTATATTTTTTAGCTTAAAGGAAGAGCTCTACTCTGC
CCAGCTGCTGAACCAAGGCTAAAGGATCATTCCCTTGTATTTAGAATGTG
CACTATAAGAATCATCTCACCCATAAGGTGTGCTATAAATTTAGTGTCTT
CCCTCACACTCTCTGGGCTTCCAGGCCCTGTCTAGGCAGATGTTTGTCTC
TTCTTAGCTCCCTCTCTGGAGGAATAGCTGGCTATGGAACTGAAAGCTTC
CCTCCCCAGCTCTTTCAAGTTTAACAAGATCAAAGTAACTTTCTTTATGT
GATCTGCATAACCTGGTTTGGCCCTCTTACCCCTAAGCTGCCGGGGCTTT
TTTTTTTTACGCAACAGCCCCAGTGTTTTTTTTACCCTCTTGGTTTCTTT
ATTTCATCGTCTTTTTCCCCCCGCACGCCAACAAATTTTTTTTTCCCTTT
TACACTTGGTACCCTCTTCTACTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_f12.g1 MSMg01no377_f12.g1 CHROMAT_FILE:
MSMg01no377_f12.g1 PHD_FILE: MSMg01no377_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:29 2005
         (240 letters)



>mm_chr8_107277062_107277701
          Length = 640

 Score =  422 bits (218), Expect = e-122
 Identities = 233/238 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttactatgataagacagatggagctctgacgttttcaaattgtatgcagtttccaaac 60
           |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 438 ctttaccatgataagacagatggagctctgatgttttcaaattgtatgcagtttccaaac 379

                                                                       
Query: 61  tatagcatctgaaagcagttgttctggaacagagaccacacagtgattgacaaaaagaat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 378 tatagcatctgaaagcagttgttctggaacagagaccacacagtgattgacatagagaat 319

                                                                       
Query: 121 aatagtgaaagaaatagtctcatacttaagtgtaggtggtaggaaagttcatatttttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aatagtgaaagaaatagtctcatacttaagtgtaggtggtaggaaagttcatatttttat 259

                                                                     
Query: 181 gcaaaatttactcatctatgctggtaaatgagcaaatttggatacatagaaatcatta 238
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gcaaaatttacttatctatgctggtaaatgagcaaatttggatacatagaaatcatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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