BAC Information

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BAC

Clone NameMSMg01-377G03
Chromosome8 (Build37)
Map Location 53,567,633 - 53,568,040
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
Downstream geneLOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377G03.T7 (MSMg01no377_g03.b1)MSMg01-377G03.TJ (MSMg01no377_g03.g1)
ACCAG482477AG482478
length790758
length of high quality
(start - end)
413 (72 - 484)486 (77 - 562)
definitionCHROMAT_FILE: MSMg01no377_g03.b1 PHD_FILE: MSMg01no377_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:32 2005CHROMAT_FILE: MSMg01no377_g03.g1 PHD_FILE: MSMg01no377_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATCTGGTTACCATGAAAGTTTGATCGATATTTTTATCGATA
TTTTTTGCAAACAATGGTAATATCTATAATCAGACCAGAACAAGCCTTGC
CATTCCCATGAGCAAGACCATTCCCATGAGTCTGAGGAATTAGGATCCTT
TCACGGCAATCCACATTCCCTTCATAGGCTCCACATATATCAGTCCCTGA
GTCCACCCACCAAGTATCAGCTGAAAACGATAATTGTGCATTATGTGTGA
ATTAGCTGTATAATTGGTTAAAACACTGACAGTGAAGCTAAATTTTTCCA
ATGATTTCTTTTAAATAATAGAAGCTAGTTTTTAAGTAGTAGTTGTGAAT
CTTCAACAAATTGGCACATAACTACTAATACAAGAACTGAAATGAATTTA
TTTGTTATGATAATAGTCTCTTCATTTGCTGCATCTTGTTATACCCAATC
ACTTTAGTCCTGTAAAACAGTAAAAGAGTGACATTCTATACAAGTATAAA
AACGCGATAATTCCTCCTAGCAACAATTCCCAAGGAGCTGTTTCCCCTAT
CTGACACTATTTTCTTATGAAGCCCTGGTTTACTCATTCCTGTAATTTTC
CCTTATCCAGTTTTTTGTTTATAACCATTCTTCCCCCCCCCCTCTTTCCG
CCGTTTCCGCTTCCTTCAATCTCTTCGGTGCTCTCATTCTCTCACTTCTT
TTTTTTATTATTTCCCCTCTTGCGCCCTGTTTCCATATAT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGAAGAACTTAAATTATAAAAG
TGGACTTTACCCACTCCTACAACACCAGAAGAAGCTTGACTCCCAAGAGC
TCTGACACACCCAGGGTAACAGATGAGGCCACACCATCTGCCTCAACACT
TGATGTAACTTCGACCCCTTGGGAACCAGGAGACACAGGAACCCTGACCC
AGCCAGAAGCACACATTCTTTAAAGTTTGCAACTGTGCCCCTGAGCAGAC
CCAGAGTTCTGGCTCCCCACCAACTCCTCTTAACTCCCAGCAACTCTGAA
ACACCAGGATCTCAGGTGAGGCTCCAACCATAAAGCTGATGCCACTGAGA
TTCTAAAAGCAGATAAAGATATAAGCCTAAACTGAGAATTCACAGTAGAG
GAATTTCAAATGGCTGAGAAGCACGTAATGAAATGTTCAGCATCCTTAAT
CATCAGGCAAATGAAAATCAAAATGACCCTGAGATTCTACCTTACACCAA
TCAGAATCGCTAAGATCAAAACCACAGGTGACAACACATGTTGGAGAGGA
TGTGGAGAAAAAGGAACACTTCTCCATTACTGGGGGGATTGCCAACTGGT
ACAACCACTCTTGGAAATAAACTTGAAGGTTCCTCCACAAAATGAGAAAA
AGATCCCCCTGAAAAAACCCTTTACCACCTCCTAGAAAATATCCCCACGA
ATCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_g03.b1 MSMg01no377_g03.b1 CHROMAT_FILE:
MSMg01no377_g03.b1 PHD_FILE: MSMg01no377_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:32 2005
         (413 letters)



>mm_chr8_53567433_53568240
          Length = 808

 Score =  756 bits (391), Expect = 0.0
 Identities = 406/413 (98%), Gaps = 5/413 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaagtttgatcgatatttttatcgatattttttgcaaacaatggtaatatctataatc 60
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tgaaagtttaatcgata-ttttatcgatattttttgcaaacaatggtaatatctataatc 550

                                                                       
Query: 61  agaccagaacaagccttgccattcccatgagcaagaccattcccatgagtctgaggaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agaccagaacaagccttgccattcccatgagcaagaccattcccatgagtctgaggaatt 490

                                                                       
Query: 121 aggatcctttcacggcaatccacattcccttcataggctccacatatatcagtccctgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aggatcctttcacggcaatccacattcccttcataggctccacatatatcagtccctgag 430

                                                                       
Query: 181 tccacccaccaagtatcagctgaaaacgataattgtgcattatgtgtgaattagctgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tccacccaccaagtatcagctgaaaacgataattgtgcattatgtgtgaattagctgtat 370

                                                                       
Query: 241 aattggttaaaacactgacagtgaagctaaatttttccaatgatttcttttaaataatag 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aattggttaaaacacagacagtgaagctaaatttttccaatgatttcttttaaataatag 310

                                                                       
Query: 301 aagctagtttttaagtagtagttgtgaatcttcaacaaattggcacataactactaatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aagctagtttttaagtagtagttgtgaatcttcaacaaattggcacataactactaatac 250

                                                                
Query: 361 aagaactgaaatgaatttatttgttatgataatagtctcttcatttgctgcat 413
           ||||||||||||||    |||||||||||||||||||||||||||||||||||
Sbjct: 249 aagaactgaaatga----atttgttatgataatagtctcttcatttgctgcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 808
Length adjustment: 9
Effective length of query: 404
Effective length of database: 799
Effective search space:   322796
Effective search space used:   322796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)