BAC Information

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BAC

Clone NameMSMg01-377I08
Chromosome8 (Build37)
Map Location 105,063,507 - 105,063,910
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368, 1600027J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377I08.T7 (MSMg01no377_i08.b1)MSMg01-377I08.TJ (MSMg01no377_i08.g1)
ACCAG482582AG482583
length777782
length of high quality
(start - end)
405 (71 - 475)403 (79 - 481)
definitionCHROMAT_FILE: MSMg01no377_i08.b1 PHD_FILE: MSMg01no377_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:43 2005CHROMAT_FILE: MSMg01no377_i08.g1 PHD_FILE: MSMg01no377_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAGGATGCGC
GGAATTCCTATATTCTCATCAGGATTTTCTATATTGACCATGTTGACTGG
AAACAAGGCATTCTTTTCCCCAATAAGAAAACGTAACTTCTCAAGAGCCA
GGCATAGTGGTAGCATCCTTTCATCTTAGAACATGGGAAGCTGAAGAAGA
GGACCATGAGCTTGTTAACCTGAGCTTTATATTATCTCATAAAGTAAAAA
TATCAAAAACAAACAAAAATAACTTTTGGGATGTGCTTTCAATATACTTC
TGTGCTGTATTAACCTTATTTTGTTTTAGAAAAAATCTGCTTTAAAATGA
AAGTTTACCCTTGTTTATAATAAAATTGACTCCCTTGGCTGTCCATACCT
TCATGTGTATTGACAGAACCCTTTATACTTAGAATATCAATATTCACACA
CACACACACACACACACACACACACACATACATACATTCACACACACACT
ATTACTCTCTCTTATTGAGAGAGAGAGAGAATCTCCTTTGAAGTACACCT
TCATAATTACCCCTATTATTCACTGCTGATTCTAATTCCCTCTATCCCCC
ACATCTTATTACCAAAAATCCCTTTTCGAACTACAACCTGGCCCCCTTTA
TTCGTCTTGTTCCTTTCCTTTTGCCTTCCTTCTGTTTAACTCTCCGTTCC
TATTGTCCCCCTCGTTTCCCCCCCCCCTTTCCTCTCGGCTTCCTTTCCGC
TCCCCTTTCCCACTCGCGCCCCCTCCG
NCCCCGATGCAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATGGACAAATTTCTAATCA
TCTAGAAACACTTAAATAAATATCCAAAGTCCCTAGTCATTAAGGAAATA
CAAATCAAAAGGACTCTGATTGCCACCTTACACCATGAGATTTGCTAAGA
TCAAAAACCCAAGGGAAAGCACAAGTTGCTGAAGATGTGGAGAAAGGTGG
ACACTCCTATGTTGGGGGGAAGGGCAATCTTTTACAGCCACTCTAGAAGT
CAATTTGGCAGCTTCTCAGAAAAAAAAAGGCAATAATTTTACCTCAAGAC
CCAGCTACACTCAGTAGATGCTCTACCATCCCATAAAGACACTTGCTCGT
CTACATTCATAGCAGTCTTGTTTTTAAAAGCCAGAAATTGGAAATGACCC
AGATGTCCCTCAACTGAAGAATGGACACAGACAATGTGGTTCATTTACCA
AATGAAATACCCCCAAGCTAATGAAAACAAGGACATAATGATTTTTTGTA
GCAAATGAATAGGAAATATTATTATAAAATAATATTCCGGAGGGAGGGGA
CCCAGAAATAAATGGGATGTACTCCCTTATTAATAAAAGGTGTCTTAAGG
ACCGAAAAATCTGGGGTTAAATTTTTAGCCCACCGCAAGGTTTTAAAAAG
TGCCCTCCAAATTTTTTTTGGTATCTTTTTCCCCCCAACTATTTGATTCG
AATTTTTTTATCTATTTTCGTCCGCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_i08.b1 MSMg01no377_i08.b1 CHROMAT_FILE:
MSMg01no377_i08.b1 PHD_FILE: MSMg01no377_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:43 2005
         (405 letters)



>mm_chr8_105063337_105064141
          Length = 805

 Score =  743 bits (384), Expect = 0.0
 Identities = 399/404 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggattttctatattgaccatgttgactggaaacaaggcattcttttccccaataagaaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 574 aggattttctatattgaccatgttgactggaaagaaggcattcttttccccaataagaaa 515

                                                                       
Query: 61  acgtaacttctcaagagccaggcatagtggtagcatcctttcatcttagaacatgggaag 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acgtaacttctcaggagccaggcatagtggtagcatcctttcatcttagaacatgggaag 455

                                                                       
Query: 121 ctgaagaagaggaccatgagcttgttaacctgagctttatattatctcataaagtaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctgaagaagaggaccatgagcttgttaacctgagctttatattatctcataaagtaaaaa 395

                                                                       
Query: 181 tatcaaaaacaaacaaaaataacttttgggatgtgctttcaatatacttctgtgctgtat 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tatcaaaaccaaacaaaaataacttttgggatgtgctttcaatatacttctgtgctgtat 335

                                                                       
Query: 241 taaccttattttgttttagaaaaaatctgctttaaaatgaaagtttacccttgtttataa 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 334 taaccttattttgttttagaaaaaatctgctttaagatgaaagtttacccttgtttataa 275

                                                                       
Query: 301 taaaattgactcccttggctgtccataccttcatgtgtattgacagaaccctttatactt 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 274 taaaattgactcccttggctgtccataccttcatgtgtattgacagaagcctttatactt 215

                                                       
Query: 361 agaatatcaatattcacacacacacacacacacacacacacaca 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 agaatatcaatattcacacacacacacacacacacacacacaca 171


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)