BAC Information

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BAC

Clone NameMSMg01-377L20
Chromosome8 (Build37)
Map Location 102,496,877 - 102,497,362
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531
Downstream geneLOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377L20.T7 (MSMg01no377_l20.b1)MSMg01-377L20.TJ (MSMg01no377_l20.g1)
ACCAG482750AG482751
length772781
length of high quality
(start - end)		491 (46 - 536)382 (74 - 455)
definitionCHROMAT_FILE: MSMg01no377_l20.b1 PHD_FILE: MSMg01no377_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:02 2005CHROMAT_FILE: MSMg01no377_l20.g1 PHD_FILE: MSMg01no377_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCGTAAAAGGACAGTTTGAGGAGATATACTCAACTCTTCCACTG
TCCAACATGCACATGTTCCTTCCATATCCTAAATGTCTCCACAGCAAGTC
TAGGAGATTTTAACTTCAAGCATTTTTAAATTTTTTGTTTTAATTTTCTT
ACACTCCAGGTTTTATACCTGCCCTCTTTGGTCCACTTCCAACTTTTTCA
CATCCCATATATGCTTCCTACCCCTCTGTCTCCACAAGAATGTCCCTATC
CACCACCCCTCACCAAAATTTACCTCTAAACACCCTGGGGACTCCAGTAT
CTTGAGGGTTAGGTGCATCATCTCTGATTGACCACAGACCTGGCAGTCCT
CTGCTATATATGTGTTAGGGGCTTCATATCACCTGGTGTATGCTGTCTGG
TTGGTGTTCCAATATCTGAGATATCTCAGAGGTCTAGGTTAATTGAGACA
GATGGTCCTTATGCAGGGTTGCCCTACTCTACAGGTTCTTTCAGGCTTTC
TCTAATTCAACCCAGGGATCAGCAGCTTTTGTTCACTGGGTGGGTACCAA
TATCTGCATCTGACCTTTTCAGCTGCTTGCTGGGTCTTTGGGAATGTGGG
CATGGTAGGCCCCCTTTTTGTGAGGGCCCCTAACCCCCCTCCAAATTGGG
ATGCCCTGGGGAATCCCCCTTGAACGGGAGAAAACTTTGGTCCTGGGCGC
GGGAATCTATTTTCACCCAAAA

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTTTTTTTATTAGGTATTTTCTTCA
TCTACATTTCCAATGCTATCCCAAAAGTCCCCCATGCCCCCCCCCAACTC
CCCTACCCACCCACTCCCACTTCTTGGCCCTGGCTTCCCTCTGTACTGAG
GCATATAAAGTTTGCAATATCAATGGGCCTCTCTTTCCACTGATGGCCAA
CTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGATCCGGGGGG
GGGGGCTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCC
TTCAGCTCCTTGGGTACTTTCTCTAGTTCCTCCATTGGGGGCCCTGTGAT
CCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCTG
GCATAGCCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTT
GCTAGTGTATGCAATAATGTCAGCGTTTGAAGGCTGATTATGGGATGGAT
CCCTATATATGGCGGGCTTCTATATGGCCACCCCTTCATCTCAGCTCCAA
ACTTTGGCCCCGGAAAACCTTCCCATGGGGGGTTTGCTCCCACACCCACA
TACGAGGGATTGGCCCTCCCCTAAACCCCCTTTTTCTTTTTTTGGGTAAT
CTCCGCATACGGCTTTCTCATTTTCCCTTGCCGCCCCCTTTTTTTTTTTT
CCCCCTTCTCCGTTTTCCCCTTTTTCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_l20.b1 MSMg01no377_l20.b1 CHROMAT_FILE:
MSMg01no377_l20.b1 PHD_FILE: MSMg01no377_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:02 2005
         (491 letters)



>mm_chr8_102496673_102497563
          Length = 891

 Score =  909 bits (470), Expect = 0.0
 Identities = 482/486 (99%), Gaps = 1/486 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcgtaaaaggacagtttgaggagatatactcaactcttccactgtccaacatg 64
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattcatcgtaaaaggacagtttgaggagatatactcagctcttccactgtccaacatg 264

                                                                       
Query: 65  cacatgttccttccatatcctaaatgtctccacagcaagtctaggagattttaacttcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacatgttccttccatatcctaaatgtctccacagcaagtctaggagattttaacttcaa 324

                                                                       
Query: 125 gcatttttaaattttttgttttaattttcttacactccaggttttatacctgccctcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcatttttaaattttttgttttaattttcttacactccaggttttatacctgccctcttt 384

                                                                       
Query: 185 ggtccac-ttccaactttttcacatcccatatatgcttcctacccctctgtctccacaag 243
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtccaccttccaactttttcacatcccatatatgcttcctacccctctgtctccacaag 444

                                                                       
Query: 244 aatgtccctatccaccacccctcaccaaaatttacctctaaacaccctggggactccagt 303
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 aatgtccctatccaccacccctcaccaaaatttacctctaaactccctggggactccagt 504

                                                                       
Query: 304 atcttgagggttaggtgcatcatctctgattgaccacagacctggcagtcctctgctata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcttgagggttaggtgcatcatctctgattgaccacagacctggcagtcctctgctata 564

                                                                       
Query: 364 tatgtgttaggggcttcatatcacctggtgtatgctgtctggttggtgttccaatatctg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatgtgttaggggcttcatatcacctggtgtatgctgtctggttggtgttccaatatctg 624

                                                                       
Query: 424 agatatctcagaggtctaggttaattgagacagatggtccttatgcagggttgccctact 483
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 625 agatatctcagaggtctaggttaattgagacagatggtccttatacagggttgccctact 684

                 
Query: 484 ctacag 489
           ||||||
Sbjct: 685 ctacag 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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