NNNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTCACTCTATGCTATCCTGGATCTACTCAGACAGTAAT
AATGAATTTGATTTGGTTCTTCAAAGAAGTGCTTAAAGAATTTTCTCTAT
GATATTATGATTCAAAAAGAGAGAAATAACAAGAAATAAGTTACAGAAAC
TCCTGCTGGATATCAAAAGAGTATTATTGATTATACTCTCCACCACAATC
GGTACAGCTCTTTTATGAAAACTCAGGAGGGCATTTTCTCTGTGGGTTCG
TTGCAAGAAATAGTTGTTATTGTTATCCAACAAAGTGGCTCTTTCACCTG
TTCCTGCTTCTTTCTCGCTACTGTTAGATGTGAACCAAAGTTTGATAAAA
ACCCCTCTAAGTGAAATGGACTTTCTATCCCACGTGTGTTCGAAGCACTT
CATTTAGCTAACACTATTAAGCATCTCTTCCCTGACAAGTAAAGTCTAAT
TCTCTTCCTAAATTTTACACAACAATGTACAATTAAATAAATATGACCTT
GTGATTCTTATTTCTACAGGACATCTATGTAATATTTTCTAAGACAAAAT
ATTTTCTTAGGTCCTACTCCCATGGAATATCCCACTGCTTTTGGATGAAA
GGTCATTAACCCCTACCAAAAAAAAAAAAAAAGGGATCTACCCAAGGGAT
TGAGAAATGGAAAACTATTTCGGGGGAAGAATTTAATTCCATTCTTTTAC
AAAAAAGGACCAGTTCTTGGTTTGGGTAATTAAGGGGTTG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAATAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATTTATCCAGAAGATGCCCCAACTGGTA
TGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACTCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTGAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCCAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGGAACAAATTCTCAAAGGAACTCCCCCAAAATGTCTCCCCTGGT
AAGGGGATATAACCCCCCACCCAGGATTCCCACAAAAAAAGCGCCATTTG
TTTACATCTGGAACTTCACAAAAGGAAGAAAGAAGGGCGCCCCCCTGTCC
CCTTTTTTATCGGTTAGCAACCCCCCGGGG

Query= MSMg01no378_d20.b1 MSMg01no378_d20.b1 CHROMAT_FILE:
MSMg01no378_d20.b1 PHD_FILE: MSMg01no378_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:41 2005
         (513 letters)



>mm_chr8_41168680_41169592
          Length = 913

 Score =  969 bits (501), Expect = 0.0
 Identities = 507/509 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtcactctatgctatcctggatctactcagacagtaataatgaatttgatttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtcactctatgctatcctggatctactcagacagtaataatgaatttgatttg 264

                                                                       
Query: 65  gttcttcaaagaagtgcttaaagaattttctctatgatattatgattcaaaaagagagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttcttcaaagaagtgcttaaagaattttctctatgatattatgattcaaaaagagagaa 324

                                                                       
Query: 125 ataacaagaaataagttacagaaactcctgctggatatcaaaagagtattattgattata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataacaagaaataagttacagaaactcctgctggatatcaaaagagtattattgattata 384

                                                                       
Query: 185 ctctccaccacaatcggtacagctcttttatgaaaactcaggagggcattttctctgtgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctccaccacaatcggtacagctcttttatgaaaactcaggagggcattttctctgtgg 444

                                                                       
Query: 245 gttcgttgcaagaaatagttgttattgttatccaacaaagtggctctttcacctgttcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttcgttgcaagaaatagttgttattgttatccaacaaagtggctctttcacctgttcct 504

                                                                       
Query: 305 gcttctttctcgctactgttagatgtgaaccaaagtttgataaaaacccctctaagtgaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcttctttctcgctactgttagatgtgaaccaaagtttgataaaaacccctctaagtgaa 564

                                                                       
Query: 365 atggactttctatcccacgtgtgttcgaagcacttcatttagctaacactattaagcatc 424
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atggactttctgtcacacgtgtgttcgaagcacttcatttagctaacactattaagcatc 624

                                                                       
Query: 425 tcttccctgacaagtaaagtctaattctcttcctaaattttacacaacaatgtacaatta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcttccctgacaagtaaagtctaattctcttcctaaattttacacaacaatgtacaatta 684

                                        
Query: 485 aataaatatgaccttgtgattcttatttc 513
           |||||||||||||||||||||||||||||
Sbjct: 685 aataaatatgaccttgtgattcttatttc 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)