BAC Information

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BAC

Clone NameMSMg01-378F09
Chromosome8 (Build37)
Map Location 105,572,387 - 105,572,798
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh11, EG667618, LOC100041368
Downstream gene1600027J07Rik, LOC100041397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378F09.T7 (MSMg01no378_f09.b1)MSMg01-378F09.TJ (MSMg01no378_f09.g1)
ACCAG483206AG483207
length789781
length of high quality
(start - end)
506 (50 - 555)411 (75 - 485)
definitionCHROMAT_FILE: MSMg01no378_f09.b1 PHD_FILE: MSMg01no378_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:48 2005CHROMAT_FILE: MSMg01no378_f09.g1 PHD_FILE: MSMg01no378_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGCCCTCACCTAAATATAATAAAAGCAATTTACTGCAAA
CCAACAGCCAATATCAAATTAAATGGAGACATATTTGATGCAATCCCACT
GAAATTGGGGACAAGGATGCCTACTCTCTCCATATCTATTCAATATATTC
ATTCAAAGTGTTTGCTAGAACAATAAGGCAACTAAAAGAGATCGAGGGGA
TACAAATTGGTAAAGAAAAAACAAAGATATCACCATTTGCAGATGATATG
ATAGTATAATTAAGCAACCCCAAAAATTCTACCAGAGAACTTTCCTAGCT
GATAAACAACTTCAGCAAAATGTCTAGGTATAAAACTAACTCAAATACAT
CACTAGCCTTCTTTTATACAGAGGATAATCAGGCTGAGAAAGAAATTAGG
GAAACAATTCCCTTCACAATAGCCACAAATAGTATAAAATATCATGGGAT
AACTCTAACCAAACAAGTGAAAGACCTGTATGACAATAACTTCAAGTCTT
TCAAGAAAGAAATCAAAGGTCTCAGAAAATGGAGAGATCTCCCATGCTCA
TGAATTGGAAGAAATAACATAGCAAAAATGGCCCCCCTACCAAAGGGGAA
CCTAAGATTCAATGTAAATCCCCTCCAAACTCCCAAAAATATTTTTCCAA
AGAAATGGGAAGAAGACATCTTCCCAATTTTTCTGGGAAGGGGTAAAAAA
AAACAAAAAAAAAACCCGAAACAATTTCTTTACACTAAN
NCCAATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGGAAGAGACAAAGTATTAGT
AAGTCATTGATGTGAACTCAGAGAGGCCATTAGTGATCTAGTGAATAACA
AGACTCATCCTTACATTAAAAAAAAAATAAACTCAGTTTAAACTGGTATC
TGGGGCTAAATATTGAAACAGGGTATGAAGCCACTGTGAGATACATAGGG
AGAAGAAACTAAAGCAAGTGGCATCTGAGCTCAAGGCCAAAGAGGTAGGT
GACAGTCTGGCATGGTCATAATATGGAGCCAACCAGAGATGTTGTAATCC
ATGCGAGAGAGCATTGTGTAGGGGGAGCTGAGCTGAGCCTGTTGTGAGAC
AAAAGATCTATCTGGTGCTAACAAGCTTTGACTGGCACTTTATATATCCC
ACAGGGAAGAGAAAGTCACAGAAAGAATTTTTCAAGACATAATAAGCATA
AGACTCCCCCAGGACTTCACCAGCTCTGTGAGCAGATTAAGGATCTTTGA
ACACAGCAGATATACAGCCACCATCCCCAGTAAACCTGCCCCCTGGACAA
TATGACCTAACGTCCCCACCTGAATTATTACAAAAACTGCCCTTATACAA
TTTCTTGGGAAATTAAGGGTTCCTGGGAGAAGTTCAAAACCCTCTTGTTA
AAGGTTTAACCGCGGCCACAAACTGTTCGACACCAATTTTTTGATCGGTT
TTTTTCTCCCCCCTTTTTTTTTCCAATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_f09.g1 MSMg01no378_f09.g1 CHROMAT_FILE:
MSMg01no378_f09.g1 PHD_FILE: MSMg01no378_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:48 2005
         (411 letters)



>mm_chr8_105572187_105572998
          Length = 812

 Score =  764 bits (395), Expect = 0.0
 Identities = 408/413 (98%), Gaps = 3/413 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcagggaagagacaaagtattagtaagtcattgatgtgaactcagagaggccattagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcagggaagagacaaagtattagtaagtcattgatgtgaactcagagaggccattagt 260

                                                                       
Query: 61  gatctagtgaataacaagactcatccttacattaaaaaaaaaa--taaactcagtttaaa 118
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 261 gatctagtgaataacaagactcatccttacattaaaaaaaaaaaataaactcagtttaaa 320

                                                                       
Query: 119 ctggtatctggggctaaatattgaaacagggtatgaagccactgtgagatacatagggag 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ctggtatctggggctaaatattgaaacagggtatgaagccactgtgagatacatggggag 380

                                                                       
Query: 179 aagaaactaaagcaagtggcatctgagctcaaggccaaagaggtaggtgacagtctggca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaactaaagcaagtggcatctgagctcaaggccaaagaggtaggtgacagtctggca 440

                                                                       
Query: 239 tggtcataatatggagccaaccagagatgttgtaatccatgcgagagagcattgtgtagg 298
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtcataaga-ggagccaaccagagatgttgtaatccatgcgagagagcattgtgtagg 499

                                                                       
Query: 299 gggagctgagctgagcctgttgtgagacaaaagatctatctggtgctaacaagctttgac 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gggagctgagctgagcctgttgtgagacaaaagatctatctggtgctaacaagctttgac 559

                                                                
Query: 359 tggcactttatatatcccacagggaagagaaagtcacagaaagaatttttcaa 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggcactttatatatcccacagggaagagaaagtcacagaaagaatttttcaa 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 812
Length adjustment: 9
Effective length of query: 402
Effective length of database: 803
Effective search space:   322806
Effective search space used:   322806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)