BAC Information

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BAC

Clone NameMSMg01-378G07
Chromosome8 (Build37)
Map Location 74,030,801 - 74,031,201
singlet/doubletsinglet
Overlap genePlvap
Upstream geneUba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3
Downstream geneLOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378G07.T7 (MSMg01no378_g07.b1)MSMg01-378G07.TJ (MSMg01no378_g07.g1)
ACCAG483250AG483251
length1,315768
length of high quality
(start - end)		---401 (78 - 478)
definitionCHROMAT_FILE: MSMg01no378_g07.b1 PHD_FILE: MSMg01no378_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:52 2005CHROMAT_FILE: MSMg01no378_g07.g1 PHD_FILE: MSMg01no378_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATATTTTAACCACTAAGAAGGGACGCACAAGTACAAACAATAATAATG
CGCTCACCAAACGACACCGAGTGGTATTTCTTATTTGATTTGAGCCGTCC
GCGAAGACCGGTCAGAGCGCAAAAGATAATATATCTGATCGAGCGGGGTG
GGGAGCGTTGATTTTTTCTGGATATGCTGTTGTCGCGTTTATCAATCGGT
CTCTTTGTTGTCACCGCAACGACTCATGTTGAGCTGCTAACCACGTAGTG
TTATTCCACGCCCCACGCCCTCGACCTTGTGTATGCCGCACCCAGCTCGT
ATTGTTTTTATTTACCACCCACCATCTTGTCTTTGCTGCACGACGAGTTA
TTTCTATTATATTATGCTTTAACCCACTCCACGGACGTCTACGCTTATTT
TAATATAAACCGACGAATTTATGGAAATAATAACAATGCATTTAGAACCT
ACACCCAAGTGAGCACATTGTGAGATAAGGAGAAAATTTGCATATGAGAT
GAGATCGAACGCACGATTCTAGAAATATATTATATTTGTGATATTCCACA
TTATCTTACGCTCTATGCTCATAATTTCACACCGCTGCAACGCACATTTA
CCCGCGCAAAGTGTAGAGCGNGCAAAGATAAGTGTGACTACACGTCAATA
TCGTGTGCCATACCTGCCCTACCACGTCTCATGTATGCATAGCTTAAGTG
TTTCAAGAGAATATACACGTTTTGACCATGTAGTATGCCAAGTAGTCTCC
GTACGATTTAATAATAATTGAGTATAGCTCCCGAANCTCATGCGTCTACG
TAGCGGCATCGAGACACGGTATCGCGGTATTATTATAATCTGGACCGCCC
TCAGCGGTGACGCACTTTTACACACATAACATATTGCGGCGAGTGCGGGC
GATCTGCTTTACACGTGTAAGCGACGGCTGTACATGAAATTAATGGTCTG
GCGGATAACGATAATAGCGATCATACACCGAACTATCGGGTCTGATTACT
CTACACCCTGAGTTGTTGCCGCATGCTATACTCTCGCGCTCTTATGCAGC
TGCCTGCTATATTGATCTGCTCAACATTCCGCGTATGTCTGTCATATTGT
TATGTGCGCACGTGTGATATACATCATCTGCGCTGTCTTCGTATGCTNGT
GCGCTCCGAGAAGACGCACGCGNACTATATATCTCGTCGCGTGCGTGCTG
TCTCATACATTGCCGTGCGCCTTCTCTCGATCTCGACGAGTAGANTGACC
GATATACGATATAGCGATGTCGACTGTCGTCTCTATACACACTCGAGTNC
GTGTGATGATGTGTG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCAGGCTAGCTGGATCTATAG
AAACAAATGAAGATTCCTGATGAGCAGTCTAGGAGAAGAGAGCTGGGGTG
TGGAACCAGGAGTCCCGACTCCAGACCCCTCTGGCTGTTACTCACCAATG
GGTGGAGGGTTCGGGGGTGGGCCTGAGACTCTCGGCGGGACGGCTGGCAG
CGACTATGGGAAGAACAGGAAAGAAGTTTGAGGAGCTGCTCTCCTCTGTT
CCCTACGAAAGCCTGAGCTACCTATTTGGGATTTTGTTGGCGATTTTTTT
TTTTAAATACAATATCTCTGTGTAGCTCTGGCTGGTTTCAATCTCACAGT
GGTCCTTCTGCCCCTACAATGACGAATGGAATGCTAGGATTAGAGGTGGA
CGCCACCATGCCTGTCCTAGGGAATCTAGATCCTATCCCAAACCTTCCTG
GGACACCATTTGAGGAGCCTGACTTATGTGGGATATTAAGGCCTCGATTG
CCCCGAAGTTTATTCCTTGTATCCCATGTCCCCCTATTTTTTCTTTATTC
TCTACCCCCTTTCATCCTTGGTCCCCCCTCTCCCTGTTTTTAATGGAGCT
TCTCGTTCCCACTTTCCTTTTCTTTTATGCTTATTTTTTTTTTCTGTTTT
TCCTTCTTCCTCCTTATTTTTTTTCCGCCTTTTTCCCTCCCTTTGCTTTC
CTTTTTTTCCTTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_g07.g1 MSMg01no378_g07.g1 CHROMAT_FILE:
MSMg01no378_g07.g1 PHD_FILE: MSMg01no378_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:53 2005
         (401 letters)



>mm_chr8_74030601_74031401
          Length = 801

 Score =  768 bits (397), Expect = 0.0
 Identities = 400/401 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccaggctagctggatctatagaaacaaatgaagattcctgatgagcagtctaggagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccaggctagctggatctatagaaacaaatgaagattcctgatgagcagtctaggagaa 260

                                                                       
Query: 61  gagagctggggtgtggaaccaggagtcccgactccagacccctctggctgttactcacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagagctggggtgtggaaccaggagtcccgactccagacccctctggctgttactcacca 320

                                                                       
Query: 121 atgggtggagggttcgggggtgggcctgagactctcggcgggacggctggcagcgactat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggtggagggttcgggggtgggcctgagactctcggcgggacggctggcagcgactat 380

                                                                       
Query: 181 gggaagaacaggaaagaagtttgaggagctgctctcctctgttccctacgaaagcctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaagaacaggaaagaagtttgaggagctgctctcctctgttccctacgaaagcctgag 440

                                                                       
Query: 241 ctacctatttgggattttgttggcgatttttttttttaaatacaatatctctgtgtagct 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacctagttgggattttgttggcgatttttttttttaaatacaatatctctgtgtagct 500

                                                                       
Query: 301 ctggctggtttcaatctcacagtggtccttctgcccctacaatgacgaatggaatgctag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggctggtttcaatctcacagtggtccttctgcccctacaatgacgaatggaatgctag 560

                                                    
Query: 361 gattagaggtggacgccaccatgcctgtcctagggaatcta 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gattagaggtggacgccaccatgcctgtcctagggaatcta 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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