BAC Information

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BAC

Clone NameMSMg01-378N23
Chromosome8 (Build37)
Map Location 33,109,013 - 33,267,611
singlet/doubletdoublet
Overlap gene2010007E15Rik, EG666589
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1
Downstream geneEG546052, LOC100042715, LOC628408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378N23.T7 (MSMg01no378_n23.b1)MSMg01-378N23.TJ (MSMg01no378_n23.g1)
ACCAG483618AG483619
length749768
length of high quality
(start - end)		499 (71 - 569)447 (77 - 523)
definitionCHROMAT_FILE: MSMg01no378_n23.b1 PHD_FILE: MSMg01no378_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:28 2005CHROMAT_FILE: MSMg01no378_n23.g1 PHD_FILE: MSMg01no378_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,267,113 - 33,267,611)(33,109,013 - 33,109,459)
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATAGAACGTATCTGAACACATTTAACAAGGAATAAATCTA
AGCATGGAAAAACTCCAAGAAGGCTTAGAGAAAATGAAATGTGTTTTCAT
TTTCATATTATGAGTGACATAAATTGAATGATAATGATAATAATAAATTA
TCTACAAAATCTTGTACTTCAGAAGACTCTATTCCAGGAGTTTTACATCT
TGCTAATCTTTACTGCTGTCTTATAAAGTAGTTTATTATCATTTCCACAT
TTATATGCTAAAAATGAAATTTAAAGAAGATTAATCCATTTCTAGGATGA
CAGTTAATAGCCAACAAAACTCAGCTCTGAGTGAAAATGTTAGTAGAAAA
TAAAATTAAATAAATAAATAAATGTGCTGAGACTAGACAATTATAATAAC
TCAGATCCCTGTATAATTATTTTTATAAATGTATACGTTACATGACTGTG
CAAAGACAAACTATCACTGTCCTTTTCAGGCAATGTCTTTGAAGTGATGG
ACCTTGATGCTTATCTTAAAACAGAGGTATGAGAAGGAACTGGAAATTGC
AGGGTGCTGGTTCTCAACTTTTGGGGTAAAGGTTTTTTTACCCCCCCCCC
ACAAGAAATGTCTTGTAAAGATGATAATGAAATATAATTTTTACAGTACC
AAACTACCGTTTGATGTCGCACCAAAAATTTTATGGTGGCGACACTGCG

NNNCCGATGCAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACATGTAGAAACCTGCAAGATGG
ATCCCTGGGGAAAAAAAAGTTCTGGCTGCCATGCCTAACAACCTGAGTTA
GATCACTAGATCCCATGTGATGGAGAGAGAGCCAGTTTCCACAAGTTGTC
CCCTGTCCACTCCACACAAGATGGCAAGTGTTCATTCACAACTTCTAACA
CACACACACACACACACAGTGCATTCACACACATATGCACATGACTAAAT
GAATGGATGTGAAATACTATCATCCACACTTCACACTAATGGACTGAGAG
ATATAAAACTATGTTATTTAGCATAAGCATCATTCAAGCTTGTAAGAGTC
ATTCAATTATGATTTTAAATGTCCTGTCCTAGATTCCATATGAACTATTC
ACTACAGGTTCATGTGTTAGCCTCATACTGAGGCCAGCTGAGCTTACAAA
GGGCTGGTAACTAGAAATCTGCATGAAAGAATAGAAATAATACACACNTG
CAATCCCCTTACTTATTACCCATAATCCTTAGGGTAGGATTAACACTTAC
GGAGGAAGCGAATCAGAAGTGGGGAGAGGATTATTAAAAAAGGAAGACGG
ATAAAATATTATAATTCTGTTGAACTTATACAATTTTCCCCCACGGGAAT
AAAAATATTGGACCGGGTCCAAAAAACTTCCCTATTTTTAAACGAAAATT
GTCTCGGGAAAATAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_n23.b1 MSMg01no378_n23.b1 CHROMAT_FILE:
MSMg01no378_n23.b1 PHD_FILE: MSMg01no378_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:28 2005
         (499 letters)



>mm_chr8_33267086_33267984
          Length = 899

 Score =  965 bits (499), Expect = 0.0
 Identities = 499/499 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaacacatttaacaaggaataaatctaagcatggaaaaactccaagaaggcttagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tctgaacacatttaacaaggaataaatctaagcatggaaaaactccaagaaggcttagag 467

                                                                       
Query: 61  aaaatgaaatgtgttttcattttcatattatgagtgacataaattgaatgataatgataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaaatgaaatgtgttttcattttcatattatgagtgacataaattgaatgataatgataa 407

                                                                       
Query: 121 taataaattatctacaaaatcttgtacttcagaagactctattccaggagttttacatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 taataaattatctacaaaatcttgtacttcagaagactctattccaggagttttacatct 347

                                                                       
Query: 181 tgctaatctttactgctgtcttataaagtagtttattatcatttccacatttatatgcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgctaatctttactgctgtcttataaagtagtttattatcatttccacatttatatgcta 287

                                                                       
Query: 241 aaaatgaaatttaaagaagattaatccatttctaggatgacagttaatagccaacaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aaaatgaaatttaaagaagattaatccatttctaggatgacagttaatagccaacaaaac 227

                                                                       
Query: 301 tcagctctgagtgaaaatgttagtagaaaataaaattaaataaataaataaatgtgctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tcagctctgagtgaaaatgttagtagaaaataaaattaaataaataaataaatgtgctga 167

                                                                       
Query: 361 gactagacaattataataactcagatccctgtataattatttttataaatgtatacgtta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gactagacaattataataactcagatccctgtataattatttttataaatgtatacgtta 107

                                                                       
Query: 421 catgactgtgcaaagacaaactatcactgtccttttcaggcaatgtctttgaagtgatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 catgactgtgcaaagacaaactatcactgtccttttcaggcaatgtctttgaagtgatgg 47

                              
Query: 481 accttgatgcttatcttaa 499
           |||||||||||||||||||
Sbjct: 46  accttgatgcttatcttaa 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_n23.g1 MSMg01no378_n23.g1 CHROMAT_FILE:
MSMg01no378_n23.g1 PHD_FILE: MSMg01no378_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:28 2005
         (447 letters)



>mm_chr8_33108813_33109659
          Length = 847

 Score =  864 bits (447), Expect = 0.0
 Identities = 447/447 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatgtagaaacctgcaagatggatccctggggaaaaaaaagttctggctgccatgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatgtagaaacctgcaagatggatccctggggaaaaaaaagttctggctgccatgcct 260

                                                                       
Query: 61  aacaacctgagttagatcactagatcccatgtgatggagagagagccagtttccacaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaacctgagttagatcactagatcccatgtgatggagagagagccagtttccacaagt 320

                                                                       
Query: 121 tgtcccctgtccactccacacaagatggcaagtgttcattcacaacttctaacacacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcccctgtccactccacacaagatggcaagtgttcattcacaacttctaacacacaca 380

                                                                       
Query: 181 cacacacacacagtgcattcacacacatatgcacatgactaaatgaatggatgtgaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacacacacagtgcattcacacacatatgcacatgactaaatgaatggatgtgaaata 440

                                                                       
Query: 241 ctatcatccacacttcacactaatggactgagagatataaaactatgttatttagcataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatcatccacacttcacactaatggactgagagatataaaactatgttatttagcataa 500

                                                                       
Query: 301 gcatcattcaagcttgtaagagtcattcaattatgattttaaatgtcctgtcctagattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatcattcaagcttgtaagagtcattcaattatgattttaaatgtcctgtcctagattc 560

                                                                       
Query: 361 catatgaactattcactacaggttcatgtgttagcctcatactgaggccagctgagctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catatgaactattcactacaggttcatgtgttagcctcatactgaggccagctgagctta 620

                                      
Query: 421 caaagggctggtaactagaaatctgca 447
           |||||||||||||||||||||||||||
Sbjct: 621 caaagggctggtaactagaaatctgca 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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