BAC Information

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BAC

Clone NameMSMg01-379H21
Chromosome8 (Build37)
Map Location 59,671,379 - 59,671,637
singlet/doubletsinglet
Overlap genenone
Upstream geneHpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355
Downstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379H21.T7 (MSMg01no379_h21.b1)MSMg01-379H21.TJ (MSMg01no379_h21.g1)
ACCAG484092AG484093
length784821
length of high quality
(start - end)		438 (41 - 478)269 (70 - 338)
definitionCHROMAT_FILE: MSMg01no379_h21.b1 PHD_FILE: MSMg01no379_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:16 2005CHROMAT_FILE: MSMg01no379_h21.g1 PHD_FILE: MSMg01no379_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGATTATTCTTCATTTTTCATGTTTCAAATGAGCGTATATCAAAGAATG
AAACTTTTTAAGGGATTTACAACATTTACTAGATGAAGTGTGTTCATTTT
CTGCTGATAGGATGGGGGAGGAACAAATGAGCCCCTACCTGTAACTGAAG
CACTACTAACAGTTGATAGTTGTTAACAGATGAAGAATCAGGTTTTTTAA
AATCTTAATTTTAAGGATAGAGTCCCCGGTAGATTGACCATGCTCTAGGG
GATGCATATATAGATGGCAATAATTGGATTTAGTGGATTATGAATAAGCA
AATTAAAACAAAATCGAGGACATAATGTTAGAAAACTAATGGAGTCTTCA
AGGAATAATCAAAGGAGAAGTGGGATACACATGATAAAAAATGTATATGC
ATGTATGAAATTCTCAGAATAAATCTTAAATGTTATTTNAAAAAATAACT
ATCTAACTCAAACCTCAGTTAACTTATGAGATAGAACATAGTCTCAAAAA
TATCTTCTGTTTTGAAATTTATTATTTAACAATGGCATGTGCCCACTATT
ATGTTATGAAAAAGTTTTTAAGAATGTGAAGGTCCCCCAAAATTGCTTCC
CCCCAAAAGACATTTGGCGAGGGCCCCCCTTCCCGGGATTGGGGCCTTGG
CCCTAAACCCTTGTTCTCCCAAAAAATTTTTTTTTTCCCCCCGGGGAGAA
AGAATTCCTCCTCCCCCGCTAGCCTCCTTTTTTG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGGCTGGCCGTAATTGACGGGGCAGCATGCT
CCACATACCTCCGCGAGATGCCGGAATCGTGATCACCTCCAGTAAATTCT
GCATTTACTTTGTATGAGAAATATGTAGACTCTTGTTTATGATTTTTTAA
AAAGAAATTAATTGGAGCAAAGGTTTAGAATTATAAACCCAGTTAAGGAT
AGGACATGTGATTTAGGTAACAGATTCACAAGTGTGAGTGCGTGCATGTG
AGTGTGAGTGTGAGGTGTGTGTGTGTGTGTGTGTNTNNNNNNNNNNTTNT
TTTTTTTTTTTTTTTNNNTTNNNNNTTTNNNNNTTNTNTTTTTTNTTTTT
TTTTTTTTTNNNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTT
TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTTTTTTTNTTTTTTNTTTTNTTTTTTTTTTTTTNNNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTNNTTTTNTATTTTTTTTTTTTTNTTT
TTTTTTTTTTTTTTTNTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTN
NTTTNTTTNTTTTTTTNTTTTTTNNTTNTTTTTTTTTTTTTTTTTTTTTT
TTNTNNTTTTTTNNTNTTTTTTNNTTNNTNTTTTTTTTTTTTTNNNTTNN
NNTTTTTTTTTNTNTTTTTNTTTNTTTTTTTTTTTNNTTTNTTTTTTCCT
TTTNTTTTTTTTTTTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_h21.g1 MSMg01no379_h21.g1 CHROMAT_FILE:
MSMg01no379_h21.g1 PHD_FILE: MSMg01no379_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:16 2005
         (269 letters)



>mm_chr8_59671226_59671894
          Length = 669

 Score =  476 bits (246), Expect = e-139
 Identities = 257/262 (98%), Gaps = 3/262 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggctggccgtaattgacggggcagcatgctccacatacctccgcgagatgccggaatcg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tggctggccgtaattgactgggcagcatgctccacatacctccgcgagatgccggaatcg 353

                                                                       
Query: 61  tgatcacctccagtaaattctgcatttactttgtatgagaaatatgtagactcttgttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgatcacctccagtaaattctgcatttactttgtatgagaaatatgtagactcttgttta 293

                                                                       
Query: 121 tgattttttaaaaagaaattaattggagcaaaggtttagaattataaacccagttaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgattttttaaaaagaaattaattggagcaaaggtttagaattataaacccagttaagga 233

                                                                       
Query: 181 taggacatgtgatttaggtaacagattcacaagtgtgagtgcgtgcatgtgagtgtgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 232 taggacatgtgatttaggtaacagattcacaagtgtgagtgcgtgcatgtgagtgtgtgt 173

                                 
Query: 241 gtgaggtgtgtgtgtgtgtgtg 262
           |||   ||||||||||||||||
Sbjct: 172 gtg---tgtgtgtgtgtgtgtg 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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