BAC Information

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BAC

Clone NameMSMg01-379M10
Chromosome8 (Build37)
Map Location 4,904,209 - 4,904,477
singlet/doubletsinglet
Overlap genenone
Upstream geneCd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359
Downstream geneLOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379M10.T7 (MSMg01no379_m10.b1)MSMg01-379M10.TJ (MSMg01no379_m10.g1)
ACCAG484307AG484308
length790800
length of high quality
(start - end)
274 (40 - 313)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no379_m10.b1 PHD_FILE: MSMg01no379_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:37 2005CHROMAT_FILE: MSMg01no379_m10.g1 PHD_FILE: MSMg01no379_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTC
ACAAANATCCCCTAAAAGTAAACAAAGAGAAAGACTAATTTTGCTGAACA
GCATTTATCAAGTGGCAAATAAAACCAGATTCTCCTTGGACTGGCCATAG
AGACTCTGATACACAGTATGTTGTGGAGAGCCCTGGGGCTAATTATAATT
TATGTTAATTATGTTCTCCTGTGAGTGGCTGCAAACAAGGAATGAGTTTG
TACTCAGGTGATTTCGTATAAACCTGCTTACGACTTTAGTTTGTAAAATA
AAGGAGAACTGATGATTGGTTAGATAAAAGGGAAGGTGGAGCAGTGGAAG
GTGAGGTAGAAGATTCCCATTTTGTTTTATTTCTCCCCTTCCTCCCCATT
CGTTTTCACCCCCCCCCTTATCATTCATTCTTTTCCCTCCTTCTTTTTCC
CTTCCTTCTCCTTTTTTAACTTTCCCCTCTTTCCTTTCCTCTTCCCCCCT
TCTCCCCACCTTACTTTCTTCTTTTTTCCTTTCTCCTTTCTTCCCCTTTT
TTTCCCCCCTTTCTTTTCTCATACTTTTTTTCCTCTCCATCCTTTTTTTC
CTCCTTCCCCCTCTTTTTTTCACTTCCCCTCTTTTTTTCATTTTTTTTCT
CCTTTTCCTTTCCTCCTTCTCTCACCCTTACCCTTTTTTTTTTTTTTTTT
TTTGTCTCCCCTTTTTTCTTCACCTTTCCCACTTTTCTCCCCTTTTCCCT
TTTTTTTTTTTTCCTCCCTTCTTTATCTCCCACCTTTTTG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCATGTCTTTGAAGTTGGCCATAATGT
GCAAAGGGTTTATCACATAGATTGCATTTGTAGGGTTTCTCTCTAGTATG
TGTTCTTTTATGTATTTGGAGACTACTGGGATGTACAAAGGCTTCACCAT
ATTGAATATCGTCATAGGGTTTCTCTCCAGAATGAATTGTTTCATGCTTT
TGAGGATAACTGTGACATGCTAAGGCCTTACCATATTGAGTATATTCAGA
TGACATCTTTCATGCCTGCTTAGATAATTGGTACATGTGAAGCTTTACCA
CAATCATTACTCTGTATGAATTATTTTATGACTTCATTCTATGATCTGTT
TTAGTTTGTACGAGTACTTACCTCTTACGGTTCCTCTCACCCCGCTTTAT
TTTGTTGCTTTCCCCCCTTTACTTCCTCCTTCTCCCGCCTTCCCTTCCCT
CCCTCTTTTCCCTTCTTTTTCTCCCCCTCTGCCCCCTCTTTTTCTCTTCC
CTTCTCTCCTTCTTTCCTCCCTTTCCTTCCCTTTTTTTCTCCCCCCCCTC
TTTCATTTTCCTTCTCTCCCTTCCCCCCCATTTTTACGCTTCCCCTTTTC
TCTTTCCTCTTCCCTCACCCTCTTTTCCCTATTCCCCCCTTCTTTACCTT
CCCCCCCCCTTTAATTTTTCCTTTTCCCCCCCCCCTTTCTGCCCCTTCCT
CTTTCCTCCCTCTTCTCCCTCCTTTTTTCCCCTCTTTTTTCCCCTCTCCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_m10.b1 MSMg01no379_m10.b1 CHROMAT_FILE:
MSMg01no379_m10.b1 PHD_FILE: MSMg01no379_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:37 2005
         (274 letters)



>mm_chr8_4904149_4904822
          Length = 674

 Score =  476 bits (246), Expect = e-139
 Identities = 263/269 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcacaaanatcccctaaaagtaaacaaagagaaagactaattttgctgaacagcat 65
           ||||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gaattcacaaataaacactaaaagtaaacaaagagaaagactaattttgctgaacagcat 270

                                                                       
Query: 66  ttatcaagtggcaaataaaaccagattctccttggactggccatagagactctgatacac 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttatcaagtggcaaataaaaccagattctccttggactggccatagagactctgatacac 210

                                                                       
Query: 126 agtatgttgtggagagccctggggctaattataatttatgttaattatgttctcctgtga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 agtatgttgtggagagccctggggctaattataatttatgttaattatgttctcctgtga 150

                                                                       
Query: 186 gtggctgcaaacaaggaatgagtttgtactcaggtgatttcgtataaacctgcttacgac 245
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 149 gtggctgcaaacaaggaatgagtcagtactcaggtgatttcgtataaacctgcttacgac 90

                                        
Query: 246 tttagtttgtaaaataaaggagaactgat 274
           |||||||||||||||||||||||||||||
Sbjct: 89  tttagtttgtaaaataaaggagaactgat 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)