BAC Information

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BAC

Clone NameMSMg01-380J10
Chromosome8 (Build37)
Map Location 113,000,294 - 113,164,005
singlet/doubletdoublet
Overlap geneHydin, Vac14
Upstream genePmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, LOC672398
Downstream geneBC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380J10.T7 (MSMg01no380_j10.b1)MSMg01-380J10.TJ (MSMg01no380_j10.g1)
ACCAG484928AG484929
length756764
length of high quality
(start - end)
539 (60 - 598)523 (67 - 589)
definitionCHROMAT_FILE: MSMg01no380_j10.b1 PHD_FILE: MSMg01no380_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:42 2005CHROMAT_FILE: MSMg01no380_j10.g1 PHD_FILE: MSMg01no380_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,163,467 - 113,164,005)(113,000,294 - 113,000,816)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCAATG
AATACCACAAGACTGCAGAAGGCCCAGCAAGAGGGTTTTGCTATGGGAAC
ACATATTTATGCTCTGACTTACAATGGTTCTTGATGTCCTAGGACTTAAC
TACCTCATGCTGCAAAGGAGGTATTCTTAGAACAACTGTGTTTTGCTTTC
AATACAGAGTTTACAAAACTCCACATAATGCCTCCAACAGGCTTTGAGAT
GGCTTTGGCTAGCTGTAAGTGCTCTAAAGGTGTTCAAATGCATTGACTCC
CAGTATTTTCTGCCAAAGGGTTTGTGGATTACAATTTAAGTCAACGAGCA
CCCATGTTTAAAAAAATACTACAGCATTTGTTGTGAAGAGTATTTGTTAT
ACAAGCAAACATCTATTTTGGAACTCACAGCCACCCTTCAAATTAGGTGA
CAAGAGTTACCCCACCCAACAAGTAAGGAAACTAAGCTTTGGAAAGGCTA
AGCATCAAGGCCAAGTGTGGAAGCTAGGAAGGCTGAGATCAAAGGAGGCC
AAGCAGTTTAAGGGCCAAACATGCCAGAATCAGTGCTGCAACAGCCAAGA
CTAGTAGCAGATGACAGAGCTGGCTGGGTGCCTAAGTGAGGTGGCGCTCT
CCTCCCTTCCTTCTTTTTCCTTCACCTTTCTCCCCTTCCCACCTTATCCC
TCTTTTTTTCCCCACTTTCTTTTCCCTCTCATGTCTTTCTCGTTCCTTCA
TTTTGG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGCATTAGACTTGAGAGTGTTTATTTATCAAAGA
GACACAGAAGGAGTGCAAAGACAGGGTCACAAGCTGAGGGAAACTTTTGG
CACGCATATTATCTTCAAATGATTAGTATCCATAATAAAGAATAGCTTTG
AAGGAAAAGGCAGAATTAAATTTAGAAATGAGAGAACATGGCAGCCAGGA
AGTTCACTGAAGCTGAAATACGAGTGACCCACGGAGAATCAAAAGCTATT
CCACATCATTGTTGATCAAGAACTTTGGAAACTGAAACAGAAGGAAGATG
CTTTTGCACAGCCGCCATGTTGGATAAACTAAGGCAGGGCCCCCAACAGC
ACACCATTGGGAGGTAGATGAGGCAGGCTAAGACTCGGCTGGAGGAAGTC
TACATTATGGTCACTTTAGAGTAGATTCTGTCTGTTGGGAGTTTCAGCCA
CACTGAAGAGCAACTGGTCAAGCTGATGGGAGAGTTCCCAAGGCCCCACC
CTGCTCTGTAGCCTGTCTGCCTCTGGGTCACCTCTTTCTCCAGTCTGCTT
CTCCCTCCAAAGACCCACTTGGTTAGTACAGTTCTCCTCCACAATGCTTC
CTGGGTTGATCTTCCTTCTGGCCCGCATCACCTTTTCCTGGTATCAATCC
CCACGGGGAACCTACCACGGTTCCTGTTTATCTTCTCCTTTCCGCCTGGG
GGATAGGGCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_j10.b1 MSMg01no380_j10.b1 CHROMAT_FILE:
MSMg01no380_j10.b1 PHD_FILE: MSMg01no380_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:42 2005
         (539 letters)



>mm_chr8_113163442_113164380
          Length = 939

 Score = 1019 bits (527), Expect = 0.0
 Identities = 536/539 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agactgcagaaggcccagcaagagggttttgctatgggaacacatatttatgctctgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agactgcagaaggcccagcaagagggttttgctatgggaacacatatttatgctctgact 505

                                                                       
Query: 61  tacaatggttcttgatgtcctaggacttaactacctcatgctgcaaaggaggtattctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tacaatggttcttgatgtcctaggacttaactacctcatgctgcaaaggaggtattctta 445

                                                                       
Query: 121 gaacaactgtgttttgctttcaatacagagtttacaaaactccacataatgcctccaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaacaactgtgttttgctttcaatacagagtttacaaaactccacataatgcctccaaca 385

                                                                       
Query: 181 ggctttgagatggctttggctagctgtaagtgctctaaaggtgttcaaatgcattgactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggctttgagatggctttggctagctgtaagtgctctaaaggtgttcaaatgcattgactc 325

                                                                       
Query: 241 ccagtattttctgccaaagggtttgtggattacaatttaagtcaacgagcacccatgttt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccagtattttcagccaaagggtttgtggattacaatttaagtcaacgagcacccatgttt 265

                                                                       
Query: 301 aaaaaaatactacagcatttgttgtgaagagtatttgttatacaagcaaacatctatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaaaaatactacagcatttgttgtgaagagtatttgttatacaagcaaacatctatttt 205

                                                                       
Query: 361 ggaactcacagccacccttcaaattaggtgacaagagttaccccacccaacaagtaagga 420
           ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 204 ggaactcacagccacccttcaaattaggtgacaagggttaccccactcaacaagtaagga 145

                                                                       
Query: 421 aactaagctttggaaaggctaagcatcaaggccaagtgtggaagctaggaaggctgagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 aactaagctttggaaaggctaagcatcaaggccaagtgtggaagctaggaaggctgagat 85

                                                                      
Query: 481 caaaggaggccaagcagtttaagggccaaacatgccagaatcagtgctgcaacagccaa 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  caaaggaggccaagcagtttaagggccaaacatgccagaatcagtgctgcaacagccaa 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no380_j10.g1 MSMg01no380_j10.g1 CHROMAT_FILE:
MSMg01no380_j10.g1 PHD_FILE: MSMg01no380_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:42 2005
         (523 letters)



>mm_chr8_113000094_113001016
          Length = 923

 Score =  988 bits (511), Expect = 0.0
 Identities = 520/523 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcattagacttgagagtgtttatttatcaaagagacacagaaggagtgcaaagacaggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 agcattagacttgagagtgtttatttatcaaagagacacagaaggagtgcaaagacgggg 260

                                                                       
Query: 61  tcacaagctgagggaaacttttggcacgcatattatcttcaaatgattagtatccataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacaagctgagggaaacttttggcacgcatattatcttcaaatgattagtatccataat 320

                                                                       
Query: 121 aaagaatagctttgaaggaaaaggcagaattaaatttagaaatgagagaacatggcagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaatagctttgaaggaaaaggcagaattaaatttagaaatgagagaacatggcagcc 380

                                                                       
Query: 181 aggaagttcactgaagctgaaatacgagtgacccacggagaatcaaaagctattccacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaagttcactgaagctgaaatacgagtgacccacggagaatcaaaagctattccacat 440

                                                                       
Query: 241 cattgttgatcaagaactttggaaactgaaacagaaggaagatgcttttgcacagccgcc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattggtgatcaagaactttggaaactgaaacagaaggaagatgcttttgcacagccgcc 500

                                                                       
Query: 301 atgttggataaactaaggcagggcccccaacagcacaccattgggaggtagatgaggcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgttggataaactaaggcagggcccccaacagcacaccattgggaggtagatgaggcag 560

                                                                       
Query: 361 gctaagactcggctggaggaagtctacattatggtcactttagagtagattctgtctgtt 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctcagactcggctggaggaagtctacattatggtcactttagagtagattctgtctgtt 620

                                                                       
Query: 421 gggagtttcagccacactgaagagcaactggtcaagctgatgggagagttcccaaggccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggagtttcagccacactgaagagcaactggtcaagctgatgggagagttcccaaggccc 680

                                                      
Query: 481 caccctgctctgtagcctgtctgcctctgggtcacctctttct 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caccctgctctgtagcctgtctgcctctgggtcacctctttct 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)