BAC Information

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BAC

Clone NameMSMg01-380M10
Chromosome8 (Build37)
Map Location 87,361,666 - 87,548,768
singlet/doubletdoublet
Overlap geneRad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1
Upstream geneEG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1
Downstream gene2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380M10.T7 (MSMg01no380_m10.b1)MSMg01-380M10.TJ (MSMg01no380_m10.g1)
ACCAG485072AG485073
length772786
length of high quality
(start - end)		390 (60 - 449)384 (66 - 449)
definitionCHROMAT_FILE: MSMg01no380_m10.b1 PHD_FILE: MSMg01no380_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:56 2005CHROMAT_FILE: MSMg01no380_m10.g1 PHD_FILE: MSMg01no380_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,548,379 - 87,548,768)(87,361,666 - 87,362,049)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCCTAGAGGATCCGCGGAATTCAGCGT
GTGGCATGTGCAGAGGAACACGTAAATCCCGCAGCCCGCCGGACAGTACC
CCCCCCACCCTCCCCCAGGGAGTTCAGAGTAGAGGGAGCGACACTAAGGC
AAGCTGTCTTAGTATAACAGACTTCTATTTGATGCCAGAGAGGGAAGAAG
TAAAACGGAGTGGAAAGGGCACGTGATTATGGTGCCTCGGTTCGTTGAGA
GGTGAAGTACATTGTCCTGAACAAGTAGAGGGAGGGAGGGAAAGCATTCT
GCCTGCTGGTTTGTTGGTTTGTGCCACTGAGTGCCAAAAAGGGAGGGGAA
AAAAAAGCAGAAACAGGCATTCAAAAAGATCCTATCAGTCAGCTGAATAT
TGCACACCAGTCCTATCGGAATCGAAGTCAGGTGGTGATTTCTTCAAGGA
TTAAGTAAGGCTTGATCTCACTGGGACCTATACATTGGTCATAATGTCCT
TGCAGATCCAGGTTTCTGTGGCCTGATCTTGCAGATCCTGCTACAAACAC
CACTATTACAACTGATTCCCTCCCCCTCATCTTCTCACGTTTCTTTTTTC
GCAGCTTGCAGCCTGGCCGTTTACCTGTCTCATGGGATCTGCCAGTTGTT
CTGTTCCTTCCCTACTCACCCAGTCCCCCTCATTTTCTTATGCCCTCCGA
CTCTAAATTTCTCCTAGTGTGTGCTTCCCGGCCCTCTGGCTACCCTATTT
CTCTCTCTGGCTTTTGTGCCGC

GTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTGTCAGGGATCCTGCTTTTTAGTTCTTTCAAAC
AGATCCCCTTCCCCTCTCCCAAGTGAGCAGCCTGACAGGACAGGAAGGTC
TCATCCCTGCCCTCCACGTTCTCTGTCCAGCCTCTCTGGGAAGACTTCAA
TGGCAACACTCAATACACAAAAGCCTATGGGGTAGGCTCCACCTCCACTG
CCTGTTGAGGCACGGAGACCTGGAGACTCCCAGGAGGCAGCGATGGCCCC
CTCACCGTGATTAAGTACTCCACAGCTCGGTGGGGGTTGTTGTAGCTGGC
CCTCAATGCGGCCACAACCCGCTCCCGCTCGTAGCCCATGGACATGATCT
CAGTCAGCATCGTCTCATATTCAGAGCCAGTCACTGTGGAGGGAGCAGCA
GGGCCCGGGTCACCAGAGGCACAGGAGGACAGTTCCCAGACCCTCTCAGA
CCCAGACAAGGCTGTCATAGGTTGATGGCTGGGCCTCCCAGTCTTCTCTG
TTCTGACGACCTACCACCCACCTTAACGTGTAAGTTGCGTTTTCCCTCTC
TCCCTGTTTCTACCTGAAGAGGGAACATATGTTGCTCACTTCTAGAAAGT
TGAATTCGCCACTCCTGGCTTTCTGCTGTGTTTTGACCTCTCTCCGCCAT
CTGCCACGTAGACCCCTATAGAGTTGGGTCACTCTTTCATTCATTTTCGT
ATAGACCCCGCTTTTGTTTATTCTCGGGCTTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_m10.b1 MSMg01no380_m10.b1 CHROMAT_FILE:
MSMg01no380_m10.b1 PHD_FILE: MSMg01no380_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:56 2005
         (390 letters)



>mm_chr8_87548179_87548968
          Length = 790

 Score =  723 bits (374), Expect = 0.0
 Identities = 386/390 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagaggaacacgtaaatcccgcagcccgccggacagtaccccccccaccctcccccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gcagaggaacacgtaaatcccgcagcccgccggacagtaccccccccaccctcccccagg 531

                                                                       
Query: 61  gagttcagagtagagggagcgacactaaggcaagctgtcttagtataacagacttctatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gagttcagagtagagggagcgacactaaggcaagctgtcttagtataacagacttctatt 471

                                                                       
Query: 121 tgatgccagagagggaagaagtaaaacggagtggaaagggcacgtgattatggtgcctcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tgatgccagagagggaagaagtaaaacggagtggaaagggcacgtgattatggtgcctcg 411

                                                                       
Query: 181 gttcgttgagaggtgaagtacattgtcctgaacaagtagagggagggagggaaagcattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gttcgttgagaggtgaagtacattgtcctgaacaagtagagggagggagggaaagcattc 351

                                                                       
Query: 241 tgcctgctggtttgttggtttgtgccactgagtgccaaaaagggaggggaaaaaaaagca 300
           ||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgcctgctggacagctggtttgtgccactgagtgccaaaaagggaggggaaaaaaaagca 291

                                                                       
Query: 301 gaaacaggcattcaaaaagatcctatcagtcagctgaatattgcacaccagtcctatcgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gaaacaggcattcaaaaagatcctatcagtcagctgaatattgcacaccagtcctatcgg 231

                                         
Query: 361 aatcgaagtcaggtggtgatttcttcaagg 390
           ||||||||||||||||||||||||||||||
Sbjct: 230 aatcgaagtcaggtggtgatttcttcaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no380_m10.g1 MSMg01no380_m10.g1 CHROMAT_FILE:
MSMg01no380_m10.g1 PHD_FILE: MSMg01no380_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:56 2005
         (384 letters)



>mm_chr8_87361466_87362249
          Length = 784

 Score =  719 bits (372), Expect = 0.0
 Identities = 381/384 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgtcagggatcctgctttttagttctttcaaacagatccccttcccctctcccaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgtcagggatcctgctttttagttctttcaaacagatccccttcccctctcccaagtg 260

                                                                       
Query: 61  agcagcctgacaggacaggaaggtctcatccctgccctccacgttctctgtccagcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagcctgacaggacaggaaggtctcatccctgccctccacgttctctgtccagcctct 320

                                                                       
Query: 121 ctgggaagacttcaatggcaacactcaatacacaaaagcctatggggtaggctccacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgggaagacttcaatggcaacactcaatacacaaaagcctatggggtaggctccacctc 380

                                                                       
Query: 181 cactgcctgttgaggcacggagacctggagactcccaggaggcagcgatggccccctcac 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 cactgcctgttgaggcacggagacctggagactcccaggaggcagtgatggccccctcac 440

                                                                       
Query: 241 cgtgattaagtactccacagctcggtgggggttgttgtagctggccctcaatgcggccac 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtgagcaagtactccacagctcggtgggggttgttgtagctggccctcaatgcggccac 500

                                                                       
Query: 301 aacccgctcccgctcgtagcccatggacatgatctcagtcagcatcgtctcatattcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacccgctcccgctcgtagcccatggacatgatctcagtcagcatcgtctcatattcaga 560

                                   
Query: 361 gccagtcactgtggagggagcagc 384
           ||||||||||||||||||||||||
Sbjct: 561 gccagtcactgtggagggagcagc 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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