BAC Information

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BAC

Clone NameMSMg01-380N10
Chromosome8 (Build37)
Map Location 119,092,106 - 119,092,564
singlet/doubletsinglet
Overlap genenone
Upstream geneMaf, LOC384868, LOC668233, Dynlrb2
Downstream geneCdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380N10.T7 (MSMg01no380_n10.b1)MSMg01-380N10.TJ (MSMg01no380_n10.g1)
ACCAG485120AG485121
length704768
length of high quality
(start - end)
64 (51 - 114)482 (64 - 545)
definitionCHROMAT_FILE: MSMg01no380_n10.b1 PHD_FILE: MSMg01no380_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:01 2005CHROMAT_FILE: MSMg01no380_n10.g1 PHD_FILE: MSMg01no380_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGCGCTATACGATACTATTCGAGAGGACCGCGGAATCAAGGCATGCCC
ACCTTGCCTGGGCTTAAGCTTTTCCTGACCACTGTGCCTCAAGATATGGA
TCACAGATGTGCCCNTCCATTTTCTGGTTGTAGTTTTAATCCCAGATACC
CGGCCAAGGTTGGGACAACTGGGGCAAAGAACTTCCTAAACACTGTGGGG
GGGGGGGCTTTCCCCCTCCCCATACCATTCCCTTCCCGTCCTTTACCATT
CTTTATTTTTCCCTTTCGAGGGGAAAATTTTGGGCGAGCGCCTTTTCCCT
TCTAAAAAAAAATTAATATACGTTTTCGGTATAATACAACGCTTTTTTTT
TTCTTTTCCCCTTTTTCAACAAACACAATTTTTTTTTTTTTTTCCCACAA
CCCCCCCACTTTTTTCATACAATGTCCGGGGGGCCCCCCTCTCCTCTTCC
CCTCCTTTTCTCCTTTTCCCCGGGCGGTACTCACCTTATTTTTTATCCCC
CCCCGTCCTCTTTCCTTCGATATCTTACCACATACTCATCCTCATTTTGC
CCCCCCTATTTTTCTCTCTTATTTCTTTCCCCTTTCACTCCTCCTTCTTT
TTGTGTCAATTACGTTTGTCCCCTAACCCTTATACCCCCTCCTTTTTATA
CCTCTTCTTTCTTTTTCCTTATCATCTCTTTAAACATCCTCACTACTTGA
TTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCATTATCACAAAACCCTTGAAGACTTCTTATACTACC
TCTGCACCCTTCCCCCATGTGTGAGGCCATGCATGCTTTGGAGGGACCCC
CTCCATTTGCCTCTTCCCAGAGTCATGCTGTAACAGACAAAGCAACAAGA
TTCTGGGTATGGAGAGTCTTTGTCCACAGTGACAGACATCACTGTTGACC
ATGAGCTATATAAGACTGAGTTCTGTGGATATTTATCTGCTGAGGATGGG
GACTATATTATTATAAAGCATGGTGGGCGGGCAGGAATGTCATGGAAGAG
ATAAATGTGACGTCAGCTCCCTGAAAAAAATGTCCCCTCCATTCTAAGGT
CCCCCGCCATCCAAATGTTGCCCCTCTATACAAGTGACATTTCAGGCCAG
ACCTGGATGGAGTAGCCAGGGTTGCCAACAACCCTAGCACACCTCCAAGG
TCCCAGAAACTCCTCTATTTTGAAACCGCAGAATCCATTTGTGAATTCTA
CAGATAGATCACCATAGGGATAGGCTCGGCGTTTGCCTACCCAACCCTAC
TCACACACTGTTTCCACCTTTCTTATTCCAAGAGAGCTTCCCATCTATGT
TAACAAATCTGTCTTATAATTCCCCATTTACACTTTCCCTTCTCCACGCC
CTCTAAATTAAGCGTTCCCTCCCGTTCCCTTTATTTTTTCCCTTCTACCC
CCTCATTTCTCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_n10.g1 MSMg01no380_n10.g1 CHROMAT_FILE:
MSMg01no380_n10.g1 PHD_FILE: MSMg01no380_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:01 2005
         (482 letters)



>mm_chr8_119091905_119092785
          Length = 881

 Score =  741 bits (383), Expect = 0.0
 Identities = 441/461 (95%), Gaps = 3/461 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   attatcacaaaacccttgaagacttcttatactacctctgcacccttcccccatgtgtga 61
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||
Sbjct: 202 attatcacaaaacccttgaagacttctgatactacctctgcactcttcccccatgtgcga 261

                                                                       
Query: 62  ggccatgcatgctttggagggaccccctccatttgcctcttcccagagtcatgctgtaac 121
           || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 262 ggtcatgcatgctttagagggaccccctccatttgcctcttcccagagtcatgctgtaat 321

                                                                       
Query: 122 agacaaagcaacaagattctgggtatggagagtctttgtccacagtgacagacatcactg 181
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 322 agacaaagcaacaagattctgggtatggagagactttgtccacagtgacagacatcactg 381

                                                                       
Query: 182 ttgaccatgagctatataagactgagttctgtggatatttatctgctgaggatggggact 241
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttgaccatgagctgtataagactgagttctgtggatatttatctgctgaggatggggact 441

                                                                       
Query: 242 atattattataaagcatggtgggcgggcaggaatgtcatggaagagataaatgtgacgtc 301
           ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 442 ataatattataaaacatggtgggcgggcaggaatgtcagggaagagataaatgtgacgtc 501

                                                                       
Query: 302 agctccctgaaaaaaatgtcccctccattctaaggtcccccgccatccaaatgttgcccc 361
           ||||||||||||||  |||| ||||||||||||||||| | | |||||||||||||||||
Sbjct: 502 agctccctgaaaaa--tgtctcctccattctaaggtcctctggcatccaaatgttgcccc 559

                                                                       
Query: 362 tctatacaagtgacatttcaggccagacctggatggagtagccagggttgccaacaaccc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctatacaagtgacatttcaggccagacctggatggagtagccagggttgccaacaaccc 619

                                                    
Query: 422 tagcacacctccaaggtcccagaaactcctctattt-tgaa 461
           |||||||||||||||||||| |||||||||| |||| ||||
Sbjct: 620 tagcacacctccaaggtcccggaaactcctccatttgtgaa 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 881
Length adjustment: 10
Effective length of query: 472
Effective length of database: 871
Effective search space:   411112
Effective search space used:   411112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)