BAC Information

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BAC

Clone NameMSMg01-380O09
Chromosome8 (Build37)
Map Location 45,224,970 - 45,225,146
singlet/doubletsinglet
Overlap genenone
Upstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
Downstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380O09.T7 (MSMg01no380_o09.b1)MSMg01-380O09.TJ (MSMg01no380_o09.g1)
ACCAG485166AG485167
length1,621763
length of high quality
(start - end)
---176 (67 - 242)
definitionCHROMAT_FILE: MSMg01no380_o09.b1 PHD_FILE: MSMg01no380_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:06 2005CHROMAT_FILE: MSMg01no380_o09.g1 PHD_FILE: MSMg01no380_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCGCGGTCCGCGGCTCGCGGGCGCGCGGGGCATGTGGACGCGCGGGAG
AGGGAGAGTAAGCAGAGGATGGCAGGTACTATGACCGGGGCGCAGAGAGG
TGTGGCGAGGATGCGGTAGTGGCGACAGCGAGCGAGACATTANACATAAA
TATAACAAATATAAAGTTACCTCAACCCCAATGACAGAGCCGACTTGTGT
GACGACATTTATCACAAATGCTNCTATACACACGCTCCTTTACTCCAGTA
TTGGTAGGTGTTTGAGCGCGAGAGCCCACAGCGGGAGACACTAGCACATA
TATCAGATATATATTCTATTAGTAGCACCGCGCTGCTTCTCTGCGCGAAT
AGACAGCGCCTCTGCGCGGTGCTATCCTCCGTCAGCCTTTCCCTGCGCGT
ATGCGCTATGCGACGCCACGCTACGCCGCGCTAATACTATAATCAATTTA
TATATAAGTAGCTCGAGCAGTGAGATAAGCGCACTGTAAACGAGACGATA
CGAGGCTAGCTCGAATATTGGTCGATGTATAATATGTAGATAGGATTCGT
AGCACGAGTAGGGTGAGGGTGTGAGAGCCTCACACACTCTTGTCTACTAA
TCTCTCACAGCGCGCATCTGTGTTAGATCATGCTGCACGCCGCTCAGACC
ATCGATCAGACACAGATATAAAGTGTNAGCAGTATCGTGCTCTGACCCAC
CTCACATCTAAAAGTACTTATATTGATAGCACACAGAGACTCTGCAGTGG
AGATAACGAGAGATGCATTCTAGACAGTCTCGTTGGGTGGATGGGAGTAC
ATATGTGAGATANCCAATGGAGATAGTGAGATGGCNCAGTGTTTGAGTTC
TGTATGATAGCTATTGACAGCTATGATTATGTCATGAGCGACAGACGGAT
GAGTAATCACTCAACAGAGACATGGACTATAAGCTCAGAGTGANGATGTA
TATAACAGATANAGAGGAGAANCNCGCACGCTAGTCTGCGNCTGCGAGAG
AGTGANGATGTGAGATGACGACGTCACGTCCGCAGACTATACAGACCGGC
AACTTATGTNATAATATAGATATCGACAGCCTTCACAGTATGACAGTTGA
TATNACACNAGTATACGACATAGTATATANCTTTGAGCGAGCACNAGNAT
AGACTGCACTGCTGCGCTGGATATGAGTCACATATGTATANTATACATGA
CAAGGTTGATATAGAGATGAGCTAGTGAACATACGTCTATGTACTCCATA
GATAGCTGCGNGCGTCGCAGACGACACGACCACGCGGCGAGCATGCACTG
TATTATGGTGCATCACTGCGTCTTGTGTGACTGACTACTCGATGATTATG
TTACCAGCAGTGATGAGTCCCTAGCCCATCAGCACGCACCAAGAACTATA
TGACTCGTATGACCACAGACTCCGACGGCCCAGGCAGCTATAGATACTCC
GCGCGGACGATGTATCTCGCACGTACTATTTNCTCGATACGTCTGTGACT
TACACCGCGGAGACCGCGCTGTATGTGNGTTTGAGTGGCGGCTCCGCTCG
CTTCATGAGTGTCTCTGTTCTATATATACACGCTCTACGTATTATCACGC
GACTNCGGCGCCCAGCTCCCT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCATCAGGATGGATGAGGAAAATTCAGAATTGCA
TTCCACTTAAAATTTCCAGGTTGTTATGAAATAAAGTTGTGTGATTTTAA
CGGAAAAATATCACATATTCTTTCTTGCTTGACTAAATTTGTTTCAGTTG
ATGGAGCCAAACTCACTGGGGTGGACTGTTGGCTTTGGATAATATTTGGT
TTCCAGGACCCATGTCAGGTGGCTCATGACCAACTATAACTTCAGCTCCA
AGGGATTTGTATTTCTCTGGTCAATATAGATATTTGTACTCATGTGTCAC
ATCCATACATATATTCACCTACACAAACATACACATCACAACACACACAA
TCCATACTCATTTATATATATATTAAAAATTTTAAAGTATTTATTTATTT
TAAAGGGTAAATAAACTGTAAATAAGACTGGATTTTATGTGTTTATTATG
TGCTGAGTGCACCAGTTTTATCCTCATAATTGAAATGGTCTAGAATACAA
AGTTACTCATTTACTTTAGCCAGGTGTGTTAGATCAGTTCTGACATGGTT
GACCGTGTCTCTATTATGGTTGTGCACGTTTACTTCTCACAGTTACACAA
CATTTAACAAAACTGATTCGTTCACTCTTCCATCTCGACCTCAATTTCCC
GAACTACTTTTGCATCCTTATGCTTATTCCCAACACTTTTTTAGCCCCCT
TTTTTTACCGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_o09.g1 MSMg01no380_o09.g1 CHROMAT_FILE:
MSMg01no380_o09.g1 PHD_FILE: MSMg01no380_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:06 2005
         (176 letters)



>mm_chr8_45224770_45225346
          Length = 577

 Score =  319 bits (165), Expect = 5e-92
 Identities = 174/177 (98%), Gaps = 1/177 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcaggatggatgaggaaaattcagaattgcattccacttaaaatttccaggttgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcaggatggatgaggaaaattcagaattgcattccacttaaaatttccaggttgtta 260

                                                                       
Query: 61  tgaaataaagttgtgtgattttaacggaaaaata-tcacatattctttcttgcttgacta 119
           |||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct: 261 tgaaataaagttgtgtgattttaagggaaaaaaaatcacatattctttcttgcttgacta 320

                                                                    
Query: 120 aatttgtttcagttgatggagccaaactcactggggtggactgttggctttggataa 176
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttgtttcagttgatggagccaaactcactggggtggactgttggctttggataa 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 577
Length adjustment: 8
Effective length of query: 168
Effective length of database: 569
Effective search space:    95592
Effective search space used:    95592
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)