BAC Information

Click to search

BAC

Clone NameMSMg01-382D02
Chromosome8 (Build37)
Map Location 128,842,993 - 129,001,786
singlet/doubletdoublet
Overlap geneSlc35f3, LOC668434, 1810063B05Rik, EG619653
Upstream geneSipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1
Downstream geneIrf2bp2, Tomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382D02.T7 (MSMg01no382_d02.b1)MSMg01-382D02.TJ (MSMg01no382_d02.g1)
ACCAG486155AG486156
length780759
length of high quality
(start - end)		412 (29 - 440)511 (60 - 570)
definitionCHROMAT_FILE: MSMg01no382_d02.b1 PHD_FILE: MSMg01no382_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:51 2005CHROMAT_FILE: MSMg01no382_d02.g1 PHD_FILE: MSMg01no382_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,842,993 - 128,843,397)(129,001,276 - 129,001,786)
sequence
GCGCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCACTCTGAGT
TTTGAAAATTCACTGTAATTCAAGTCAGGAAACACTGGTAGGAGGGCCTA
AAGCAAGAAGCCAGGCCTGTTCTTCTTGTCTCTCTCTAGACCCTAGGGCA
CTTGCAGGGCCACATGGAAGCTTGACTAGGGAGTCATGGCTGTGGTTTCC
CGGGGGTCTTCTCACTTGGAAATGGACATGTCAGAAACCTGAGGATATAT
ATTCATCCCGGATTGGTTTCAGATTCACTGTGCAGCCAAGAATGAGCTTC
TGCTCCTCCCACCTCCCAAGTGCTCCCAAGTGCTCCCAAGTGCTCCCAAG
TGCCCCCAAGTGCTGGTATCAGAGGTGTGCGCCACCACAGTTCAGTTTAT
GCAGTGTTGAAGATGGGACCCAGAGCCTTGTGCATGCCTGTATTCCAACT
GAGCTGCATCCCAGTCCAAGCTGTGCATCATTACAACTCTAGAGAGATTG
GGTTTGGCTAGCCATGGTCTCACTTAGTTACCATCTTGAGTTGGGATTTG
CTCCCATAAGATTATGTTTCATGATTCATGGCCACCTTTTTTCAGTTTAA
ATTGTCTAATTGACTTGTCTCGGGGTTTTATCCATTTACTCAGTAGCTTT
GTTAATACCCCGTTATTGTTGTGTTGTCCCCTCCCCTGCTTCTCTGTGTT
GTAAACAATAGGACATTATGTCCCTTTTTATTTTTTCTCCTTTTTTGCTC
TTTTTACATTTGTTCATTACTATATCTTAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCATGAGGAGTGAGACCAGCAGAGTGCATGCCAAGATAGAGT
CTTCTTTGTCTACTTCTGAATCTGGCAGTGGATACGATCAGAAATATAGA
CCCACAGGGAAGCCTGATTTTGAATTTGCTCCTGGGAACTAGAAGGCAGC
ACTGTGTGGGGCGATCAACCTATATTCTTGAACTAGGGCCCTGGGTTCAG
GGTTCTGAGGAGAGCTTGCTTTCAGCTGCAGCCTATTCTGCTAAGTGTGT
GTGGCCTCTGATGCCCCCCACCCCAAGTCATACTTAATTTATTACATTGC
TCTCCTACCTCCCAGTTTGAACTCAGAACCTCAAGCATGCCAGGAAACAT
CTCTCCCACCTGTTTCCCCAACCCAGACTGATCTTGAGTTGTAGCCCAGG
CAGGTGACCCTCCTGCCTCAGACTTCTGATATTTGCTTATAGTGACAATC
ATGTACACCTGACTTCATGACTTATCAGTGTGTGGAGTAGTGGAGTATAG
GCTTGTATTGGCCTGTGAGGTTGGGGCTGCTCACCGTGTGTGTGCATGCG
CGTGTGTGTGTTTTGTGTTGATGTCTGGTGCCTTCCTCTATCACCCTCTA
TCTTTGGTGCCTTTTGCTCATTTTCGTTTCACATCTGTTCTTCTTTATAC
ATTTCCCTTCCATTTTGTGTTTTCTCCTTTTCCTTTTATATTTTCTTATC
TTTTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_d02.b1 MSMg01no382_d02.b1 CHROMAT_FILE:
MSMg01no382_d02.b1 PHD_FILE: MSMg01no382_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:51 2005
         (412 letters)



>mm_chr8_128842786_128843597
          Length = 812

 Score =  729 bits (377), Expect = 0.0
 Identities = 398/405 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcactctgagttttgaaaattcactgtaattcaagtcaggaaacactggtaggagg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcactctgagttttgaaaattcactgtaattcaagtcaggaaacactggtaggagg 267

                                                                       
Query: 68  gcctaaagcaagaagccaggcctgttcttcttgtctctctctagaccctagggcacttgc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 268 gcctaaagcaagaagccaggcctgttcttcttgtctctctctagaccctagagcacttgc 327

                                                                       
Query: 128 agggccacatggaagcttgactagggagtcatggctgtggtttcccgggggtcttctcac 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agggccacatggaagcttgactagggagtcatggctgtggtttcccgggggtcttctcac 387

                                                                       
Query: 188 ttggaaatggacatgtcagaaacctgaggatatatattcatcccggattggtttcagatt 247
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 388 ttggaaatggacatgtcagaaacctgaggatatatatccattccggattggtttcagatt 447

                                                                       
Query: 248 cactgtgcagccaagaatgagcttctgctcctcccacctcccaagtgctcccaagtgctc 307
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 448 cactgtgcagccaagaatgagcttctgctcctcctgcctcccaagtgctcccaagtgctc 507

                                                                       
Query: 308 ccaagtgctcccaagtgcccccaagtgctggtatcagaggtgtgcgccaccacagttcag 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 508 ccaagtgctcccaagtgcccccaagtgctggtatcagaggtgtgcgccaccacggttcag 567

                                                        
Query: 368 tttatgcagtgttgaagatgggacccagagccttgtgcatgcctg 412
           ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 568 tttatgcagtgttgaagatggtacccagagccttgtgcatgcctg 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_d02.g1 MSMg01no382_d02.g1 CHROMAT_FILE:
MSMg01no382_d02.g1 PHD_FILE: MSMg01no382_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:52 2005
         (511 letters)



>mm_chr8_129001076_129001986
          Length = 911

 Score =  980 bits (507), Expect = 0.0
 Identities = 510/511 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaggagtgagaccagcagagtgcatgccaagatagagtcttctttgtctacttctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 catgaggagtgagaccagcagagtgcatgccaagatagagtcttctttgtctacttctga 652

                                                                       
Query: 61  atctggcagtggatacgatcagaaatatagacccacagggaagcctgattttgaatttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 atctggcagtggatacgatcagaaatatagacccacagggaagcctgattttgaatttgc 592

                                                                       
Query: 121 tcctgggaactagaaggcagcactgtgtggggcgatcaacctatattcttgaactagggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tcctgggaactagaaggcagcactgtgtggggcgatcaacctatattcttgaactagggc 532

                                                                       
Query: 181 cctgggttcagggttctgaggagagcttgctttcagctgcagcctattctgctaagtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 531 cctgggttcagggttctgaggagagcttgctttcagctgcagcctgttctgctaagtgtg 472

                                                                       
Query: 241 tgtggcctctgatgccccccaccccaagtcatacttaatttattacattgctctcctacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgtggcctctgatgccccccaccccaagtcatacttaatttattacattgctctcctacc 412

                                                                       
Query: 301 tcccagtttgaactcagaacctcaagcatgccaggaaacatctctcccacctgtttcccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcccagtttgaactcagaacctcaagcatgccaggaaacatctctcccacctgtttcccc 352

                                                                       
Query: 361 aacccagactgatcttgagttgtagcccaggcaggtgaccctcctgcctcagacttctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aacccagactgatcttgagttgtagcccaggcaggtgaccctcctgcctcagacttctga 292

                                                                       
Query: 421 tatttgcttatagtgacaatcatgtacacctgacttcatgacttatcagtgtgtggagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tatttgcttatagtgacaatcatgtacacctgacttcatgacttatcagtgtgtggagta 232

                                          
Query: 481 gtggagtataggcttgtattggcctgtgagg 511
           |||||||||||||||||||||||||||||||
Sbjct: 231 gtggagtataggcttgtattggcctgtgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |