BAC Information

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BAC

Clone NameMSMg01-382D24
Chromosome8 (Build37)
Map Location 81,131,956 - 81,132,434
singlet/doubletsinglet
Overlap geneSlc10a7
Upstream geneTmem34, Ednra, EG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, LOC100039466
Downstream geneLsm6, EG666340, EG666346, D630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382D24.T7 (MSMg01no382_d24.b1)MSMg01-382D24.TJ (MSMg01no382_d24.g1)
ACCAG486199AG486200
length773776
length of high quality
(start - end)		493 (33 - 525)450 (64 - 513)
definitionCHROMAT_FILE: MSMg01no382_d24.b1 PHD_FILE: MSMg01no382_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:56 2005CHROMAT_FILE: MSMg01no382_d24.g1 PHD_FILE: MSMg01no382_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCTTGGTT
TATATATGTCCTCCCATTTTTAATTGGATTGTCTTGTTTTGTTTTGATAT
CTTTCTTGGTTTTGATATATATATATATTGGATATCAGTCCTCTAACTGA
AGTAGAGTTGATAAAAAATCTTTTCCTAATCTGTGAGCCACCATTTTGTC
CTATTGGCAGTATTCCTCATCTTACAGAAGCTTTTCCGTTTAATGAGGAA
ACTTATTGATTATTTATCTTAGTGCCTGTGCTATCAGTGTTCTAGTCAGA
AAGTCTTCTCCTCTACCAATGAGTTCAAGGCTATTCTCCACTTTCTCTTC
TGTTAGGTTCTGTTAGGTTTTATGTTGAGGTCTTTGATCCACTTGGACTT
GAGTTTTGTGTATACGGTGATAAACATGGATCTATTTGCCTCCTTCTACA
TGCCAACATCCAGTCTAACCAGCACCATTTTTTGAATATGCTTTCTTTTT
TTCCATTGTATAATTTGGCTTCTTTATAAAATAAAAAAAGCAGGTGTTAA
TAGGTGTGTGGGGTTACATCTGGCTCTTCAACTTGATTCCATTGATCACT
TTGCCCGTTTTTATCCCATTCCTTACACGTTTTTATTCTATAAAATCGGT
TTAAAATCTGGCGGCTCCATATTTGGGGAATCCTACGTTCTCTTTTTTTT
GTCAGGTGTTTTTCACCATCCTTGTTTTTTTTTTCTTTTTAGTTTAATAT
TGCCGTTCCATATTTAAATAATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTGTAGAATGTCCCTCACAGGTCCAAGGTTTTTTTT
TTAAAGATATGTTTTGTTTATTTTACTTTTTATGAATATGAGTACACTGT
AGCTGTCTTCAGACACACCAGAAGAGGGCATTGGATCCCATTACCATGTG
GTTGCTGGGACTTGAACTCAGGTCCTTTGGAAAAGCAGTCAGTGCTCTTA
ACCACTGAGCCATCTCTCCAGCCCCCTCAGGTCCAAGTTTTGAACATGTG
ATTTCAAAACAGATATTGGCACTGCTTGCAGACTTTTAGGGCACTGAGTC
TAGGGTAGGCCTTTGAAGGTTATAACTGTCCCCAGTTTGGATCTATCAAT
TTCTTTCATATGAGGAAGTAGCAAACCTTGATACTAAGGATGGAGTTGGA
GCCATGCCTTCCCTGCATGATGGACCATGAGCTAGTATAAACAAGCATAA
AAATAATTAATATAGAAAATGGGTACCAAGAAGTAGGATCATTGCTGCGA
TGAACCTAAAGATTAAAATTATAGGCTTTTTGCACCATCTTTCAGGCAGA
TTGTGGAAAAATTTGGTGCTCCCAGCTTAAAATTGTGTGAACTTAAAATA
AACGCACTTTTTGTTGGAATTTCAAAAAACGGTATGCCCACATCCCTTCA
TTCATGAATGCCTGTCTTTGAGGTTCCCTAAACCTAAAAAACCCTATCCC
CTAAAAGTCATGTTTGATCGTGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_d24.g1 MSMg01no382_d24.g1 CHROMAT_FILE:
MSMg01no382_d24.g1 PHD_FILE: MSMg01no382_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:57 2005
         (450 letters)



>mm_chr8_81131785_81132634
          Length = 850

 Score =  733 bits (379), Expect = 0.0
 Identities = 442/479 (92%), Gaps = 29/479 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtagaatgtccctcacaggtccaa-g----------gtttttttt-----------t 38
           ||||||||||||||||||||||||||| |          |||||||||           |
Sbjct: 172 actgtagaatgtccctcacaggtccaaagtttttgttttgttttttttcaaagttttttt 231

                                                                       
Query: 39  taaa-gatatgttttgtttattttacttt------ttatgaatatgagtacactgtagct 91
           |||| |||||||||||||||||||| |||      |||||||||||||||||||||||||
Sbjct: 232 taaaagatatgttttgtttattttattttatttttttatgaatatgagtacactgtagct 291

                                                                       
Query: 92  gtcttcagacacaccagaagagggcattggatcccattaccatgtggttgctgggacttg 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gtcttcagacacaccagaagagggcattggatcccattaccatgtggttgctgggacttg 351

                                                                       
Query: 152 aactcaggtcctttggaaaagcagtcagtgctcttaaccactgagccatctctccagccc 211
           ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 352 aactcaggtcctttggaaaagcagtcagtgctcttaacccctgagccatgtctccagccc 411

                                                                       
Query: 212 cctcaggtccaagttttgaacatgtgatttcaaaacagatattggcactgcttgcagact 271
           |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 412 cctcagatccaagttttgaacatgtggtttcaaaacagatattggcactgcttgcaaact 471

                                                                       
Query: 272 tttagggcactgagtctagggtaggcctttgaaggttataactgtccccagtttggatct 331
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 472 tttagggcactgagtctagggtaggcctttgaaggttatagctgtccccagtttggatct 531

                                                                       
Query: 332 atcaatttctttcatatgaggaagtagcaaaccttgatactaaggatggagttggagcca 391
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atcaatttctttcatatgaagaagtagcaaaccttgatactaaggatggagttggagcca 591

                                                                      
Query: 392 tgccttccctgcatgatggaccatgagctagtataaacaagcataaaaataattaatat 450
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tgccttccctgcatgatggaccatgagctagtataaacaagcataaaaataattaatat 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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