BAC Information

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BAC

Clone NameMSMg01-385G06
Chromosome8 (Build37)
Map Location 47,135,275 - 47,135,810
singlet/doubletsinglet
Overlap geneSnx25
Upstream geneFat1, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp
Downstream gene4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385G06.T7 (MSMg01no385_g06.b1)MSMg01-385G06.TJ (MSMg01no385_g06.g1)
ACCAG488602AG488603
length762766
length of high quality
(start - end)
526 (19 - 544)534 (54 - 587)
definitionCHROMAT_FILE: MSMg01no385_g06.b1 PHD_FILE: MSMg01no385_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:57 2005CHROMAT_FILE: MSMg01no385_g06.g1 PHD_FILE: MSMg01no385_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACGACTCACTTATTCGAGAGGATCCGCGGAATTCCTGATCTTTCCAGAA
CTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCC
AACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGAT
TACATTGATGGATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAA
AACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTTGG
TTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAAT
TGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCA
GAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCT
ATCTTGTGAAAAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGT
CTGATAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTG
GGAGACTATTTATAACTGCTTCTATTTCTTTAGGGGATATGGCACTGTTT
AGAAGGTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAT
AAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGACTAAAGCCTTT
TTGTAAAAGATTCGATGGTGTTTTTTATTTCCTCCATATTTGTTGGTAGG
TTCTCCCTTTTCACCTTGAATTTGTTAATCAAAAACTCCGTATTTGTTTC
CCTCTATATTAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTGAAAATAAGAACAAAGTTAGAGGACTCACACTTCCTGACTTCCAAA
CTTCTAAAGCTGCAGTACTGAAAGCCAGTGGGACTGGCACAAGGCAAGGC
ATAAAGATCAATCAGTGGAGTCCACAGCCCTGAATAAAAACTCAACCACG
TGGTCATGTGAAAGGACAAGTGTCTTCCAACAAATGACCACAGGAAACTG
GATGCCCCTATGCAAGAGAATGGTGGTGGACTCCAAGATTAACTAAGAAT
GCCCAGGGACAAAAGCACAAAATCTACAAAATAAAACCAGAGAAGGCGGC
AGCACAATGCTAGGGTAAGCCAAGGCAACTTCTAGTGGACACCAAAGGCA
CAGGCAACAAAAGAACAGAAAAACAGCACTTTTTTAAATTCTGTAAAACA
GTGAAGAGGCCAAGCCTACAAAGGGAGGGAATACGTACATATAACATACT
CGATGGTACAACATACGTTATATGCTTTAACAGTCCGGACATAAAGAGAA
CTTTTGAAATTTGACACTACATGACCTACTTTAAGAACGGGAAACAGACT
TGCATACACATGTTTTCAACAATATATAAAAGGCAGTTACTAGACACATA
AAACCGTGGCCGGTGGCATTAATACATTAAGAAATGCCAGTCTAAACTCC
AGGTCCCCTTTTCTTGGGAAAGGACCTATAAAAAACCCCAAAAAGAAAGA
GAGAAAAGTTGAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_g06.g1 MSMg01no385_g06.g1 CHROMAT_FILE:
MSMg01no385_g06.g1 PHD_FILE: MSMg01no385_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:57 2005
         (534 letters)



>mm_chr8_47135075_47136010
          Length = 936

 Score = 1017 bits (526), Expect = 0.0
 Identities = 533/536 (99%), Gaps = 2/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaaataagaacaaagttagaggactcacacttcctgacttccaaacttctaaagctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaaataagaacaaagttagaggactcacacttcctgacttccaaacttctaaagctgc 260

                                                                       
Query: 61  agtactgaaagccagtgggactggcacaaggcaaggcataaagatcaatcagtggagtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtactgaaagccagtgggactggcacaaggcaaggcataaagatcaatcagtggagtcc 320

                                                                       
Query: 121 acagccctgaataaaaactcaaccacgtggtcatgtgaaaggacaagtgtcttccaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagccctgaataaaaactcaaccacgtggtcatgtgaaaggacaagtgtcttccaacaa 380

                                                                       
Query: 181 atgaccacaggaaactggatgcccctatgcaagagaatggtggtggactccaagattaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaccacaggaaactggatgcccctatgcaagagaatggtggtggactccaagattaac 440

                                                                       
Query: 241 taagaatgcccagggacaaaagcacaaaatctacaaaataaaaccagagaaggcggcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagaatgcccagggacaaaagcacaaaatctacaaaataaaaccagagaaggcggcagc 500

                                                                       
Query: 301 acaatgctagggtaagccaag--gcaacttctagtggacaccaaaggcacaggcaacaaa 358
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaatgctagggtaagccaagccgcaacttctagtggacaccaaaggcacaggcaacaaa 560

                                                                       
Query: 359 agaacagaaaaacagcacttttttaaattctgtaaaacagtgaagaggccaagcctacaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaacagaaaaacagcacttttttaaattctgtaaaacagtgaagaggccaagcctacaa 620

                                                                       
Query: 419 agggagggaatacgtacatataacatactcgatggtacaacatacgttatatgctttaac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggagggaatacgtacatataacatactcgatggtacaacatacgttatatgctttaac 680

                                                                   
Query: 479 agtccggacataaagagaacttttgaaatttgacactacatgacctactttaagaa 534
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 agtccggacataaagagaacttttgaaatttgacactagatgacctactttaagaa 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 936
Length adjustment: 10
Effective length of query: 524
Effective length of database: 926
Effective search space:   485224
Effective search space used:   485224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)