BAC Information

Click to search

BAC

Clone NameMSMg01-385N02
Chromosome8 (Build37)
Map Location 65,756,505 - 65,757,063
singlet/doubletsinglet
Overlap geneSpock3
Upstream geneLOC384830, LOC100040804, LOC665267
Downstream geneLOC384831, EG244495, Tll1, LOC100040989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385N02.T7 (MSMg01no385_n02.b1)MSMg01-385N02.TJ (MSMg01no385_n02.g1)
ACCAG488929AG488930
length741735
length of high quality
(start - end)
523 (33 - 555)559 (62 - 620)
definitionCHROMAT_FILE: MSMg01no385_n02.b1 PHD_FILE: MSMg01no385_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:29 2005CHROMAT_FILE: MSMg01no385_n02.g1 PHD_FILE: MSMg01no385_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGCCCA
TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAA
AGTAAATGGTGACAAGTTGGAAGCAATCCCACTAAAATCAGGGACTAGAC
AAGGCTGCCCACTTTCTCCCTACCTCTTCAACATAGTACTTGAAGTCCTA
GCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATATAAATTGGAAA
AGATGAATTCAAAATATCGCTTTTTGCAGATGATATGATAGTATATATAA
GTGACCCTAAAAATTCCACCAGATTACTCCTAAACCTGATAAACAGCTTC
GGTGAAATAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCT
CTACACAAAGAATAAACAGGCTGAGAAAGTAATTAGGGAAACAACACTCT
TCTCAATAGTCTCAAATAATATAAAATATCTTGGGGTGACTCTAACTAAG
GAAGTGAAATATCTGTATGATAAAAACTTCAAGTCCCTGAAGAAAGAAAT
TAAAGAAGATCTCAGAAGATGGAAAGATCTCCCACGCTCATGGATTGGCA
GGATCAACATTGTAAAAATGGCTATCTTGCCCAAAGCAACCTACAGATTC
AATGCAATCCCCATCCAAATTCTCAATCAATTCTTTCACGAAATANAAAA
GAGCAATCTGTCAATTCATCCGGAAATACAAAAAAACCTAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAGAGGACCAGAAGAATAAATAGAATTATGTAGCAGTGG
AAGGTTTAGAATGGGGGAAGCCACTAGAAAGCCCTAGACTCCGGGTATGC
AAGAGGCTCCCAGGACCCAGTGGTGATGACATTAGCTGAAACACCCAACA
GAGAAGAGATAGACCTTGAAGAGACCAACTTAAATAGATAGACATGGCAC
CCATTTGAGGGAAGGTACTACTCTCATCTCAAATTTTTAACCCAGAATTG
TTCCTGTCTAAAGGAAATGGAGGGACAAAAAATGAGCAAAGACTGAAGGA
AATGCCCTACATTGGGATCCACCCCATTTGCAGACACCACACCATGACAC
TATTGCTGATGCCAAGAAGTGTTTGCAAACAGGAGCAAACTGTTTTTTAA
CCCAAGATATTATTATTGAAAAAATTATAATAAGCCTTTAAATTATTCGT
CTTAGCACTGAGTCACTATACCTATTGAAAATATGGTAAAAATGCAGACC
AGAATACTTGCATATTTAGATAAAATTCATATAGCTTGTATGATGTCTAT
GTATAATTGTCAACTAGACTACATCTAGAATTAGGTAAAACTCACATGTC
TGGGTATAACTCAGTGATTTGTTTTATTTTAGACCTTTTAAACTAAGAAG
ATACACTTTGAATCTGAGCTACACATTCTTCCAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_n02.g1 MSMg01no385_n02.g1 CHROMAT_FILE:
MSMg01no385_n02.g1 PHD_FILE: MSMg01no385_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:29 2005
         (559 letters)



>mm_chr8_65756305_65757263
          Length = 959

 Score = 1065 bits (551), Expect = 0.0
 Identities = 557/559 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaggaccagaagaataaatagaattatgtagcagtggaaggtttagaatgggggaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaggaccagaagaataaatagaattatgtagcagtggaaggtttagaatgggggaagc 260

                                                                       
Query: 61  cactagaaagccctagactccgggtatgcaagaggctcccaggacccagtggtgatgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactagaaagccctagactccgggtatgcaagaggctcccaggacccagtggtgatgaca 320

                                                                       
Query: 121 ttagctgaaacacccaacagagaagagatagaccttgaagagaccaacttaaatagatag 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ttagctgaaacacccaacagagaagagatagaccttgaagagaccaccttaaatagatag 380

                                                                       
Query: 181 acatggcacccatttgagggaaggtactactctcatctcaaatttttaacccagaattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatggcacccatttgagggaaggtactactctcatctcaaatttttaacccagaattgt 440

                                                                       
Query: 241 tcctgtctaaaggaaatggagggacaaaaaatgagcaaagactgaaggaaatgccctaca 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctgtctaaaggaaatgcagggacaaaaaatgagcaaagactgaaggaaatgccctaca 500

                                                                       
Query: 301 ttgggatccaccccatttgcagacaccacaccatgacactattgctgatgccaagaagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgggatccaccccatttgcagacaccacaccatgacactattgctgatgccaagaagtg 560

                                                                       
Query: 361 tttgcaaacaggagcaaactgttttttaacccaagatattattattgaaaaaattataat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgcaaacaggagcaaactgttttttaacccaagatattattattgaaaaaattataat 620

                                                                       
Query: 421 aagcctttaaattattcgtcttagcactgagtcactatacctattgaaaatatggtaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcctttaaattattcgtcttagcactgagtcactatacctattgaaaatatggtaaaa 680

                                                                       
Query: 481 atgcagaccagaatacttgcatatttagataaaattcatatagcttgtatgatgtctatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgcagaccagaatacttgcatatttagataaaattcatatagcttgtatgatgtctatg 740

                              
Query: 541 tataattgtcaactagact 559
           |||||||||||||||||||
Sbjct: 741 tataattgtcaactagact 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)