BAC Information

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BAC

Clone NameMSMg01-386F08
Chromosome8 (Build37)
Map Location 101,612,887 - 101,755,280
singlet/doubletdoublet
Overlap geneCdh8
Upstream geneLOC100041173, EG636915
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386F08.T7 (MSMg01no386_f08.b1)MSMg01-386F08.TJ (MSMg01no386_f08.g1)
ACCAG489325AG489326
length727725
length of high quality
(start - end)		677 (45 - 721)617 (74 - 690)
definitionCHROMAT_FILE: MSMg01no386_f08.b1 PHD_FILE: MSMg01no386_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:07 2005CHROMAT_FILE: MSMg01no386_f08.g1 PHD_FILE: MSMg01no386_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,612,887 - 101,613,405)(101,754,664 - 101,755,280)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCCACATCACACCGAGAAAGAGACACATAGAGACACAATGTTATA
GAAGAGTACTTTTTAAAATAATACCATCTGGTATCATAATACCTAGAGAT
TTTATCCTAAAATTTCTGGAGTAAGTATCACATTCATATGTATGCAAAAT
TTCTCTTGGAATTTCAGAAAGAAAATGAAGTATGTTTAACTGCTACATAA
ATTACACATACTTCCCTGGGCATTTTGGTAAGAATAGTTCAGATGGAACA
TGGCAAGTCATATAGTAGGGATAGTGTGAGAGAAATAGACATAATAGCTG
ACGGAGTAGATATCTGCCCAGCTTTAGTGCTGATTAAGGGCTATTATGAG
TATGAATGGTGTGTGTTCTTTTTTAACTGGAAACTGAATTATCAAAGGCA
AAGTAGATACCCCAGTTTGAGATTAAATATCAACTATGACATTTCACCAA
CATGCTTTGGCCTTGCGTTTAACAGTGTGCATCAACATTTCTCAACTAGA
CTTTCTCGTATTACAAGCATCAGTGTGAAATTAGGTGGAGAATCCACTGT
CTATGATTATATATTGATAGCACCACTCTGACCAGCCAAATGTTTCCTTA
AGATGAATATGAGAAAGCCAATGAAAATACTTTTTTTTAATGTAAGGATA
AGTTCACAAATTAAATACAGAATTTAN

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTTGGGATTTCTTCTATGCACATG
TCTATGCCAAACTATGTCTATGACATTTCCTTAGGATTTGTTTCAGGGTA
ATCTCTCTTGAAAACCTGCCCATGACCACTCTGTGCTAGACCAAAAGAGG
GGCCCATGCTTGCTGCTCCTCTATTCGCTTGAGTTCCTGAGTCAATATAT
ATGTTGCCTTCTCTTTTGTTCCCCACAAAACTCTCTGCTTCTTTAGTACA
GGGACTTTTCATTAGCATATATGCTGCCATTCAGGAGAGGTCTATGTGTG
CAGTTGTTATAAAACATGTGAGAAGAGGTTTTCTTTCTGTTATCCATGGG
TCTAATTACCTGAGCTAGCTGATTAATTGGTGGTTCCTCTGTTATTTTAT
ATTCTGAGAAGTTAAGTGTGATAGACTAAAATATTCCTTTGATATTTATG
TTCTGGCTTTTACAGCAGACAACTTTTCAAAGTACATTCAGTTGTACTTC
AGCAAAACTCAAGTGCTACATGCTGTATTATATTATTAACCTTTTGTTTC
ATATTTCTTTGATATGGTTCCTTTGCACATTCCTTAAGCTCACAGAAGTC
TAATAAATATCTTTCTGATGAAAGCTACAAAGGCATCTTANATAATAGAG
ACTAGAAATGCTATCTTAATCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_f08.b1 MSMg01no386_f08.b1 CHROMAT_FILE:
MSMg01no386_f08.b1 PHD_FILE: MSMg01no386_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:07 2005
         (677 letters)



>mm_chr8_101612529_101613605
          Length = 1077

 Score =  996 bits (515), Expect = 0.0
 Identities = 518/519 (99%)
 Strand = Plus / Plus

                                                                       
Query: 159 ctcttggaatttcagaaagaaaatgaagtatgtttaactgctacataaattacacatact 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctcttggaatttcagaaagaaaatgaagtatgtttaactgctacataaattacacatact 418

                                                                       
Query: 219 tccctgggcattttggtaagaatagttcagatggaacatggcaagtcatatagtagggat 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tccctgggcattttggtaagaatagttcagatggaacatggcaagtcatatagtagggat 478

                                                                       
Query: 279 agtgtgagagaaatagacataatagctgacggagtagatatctgcccagctttagtgctg 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 agtgtgagagaaatagacataatagctgacggagtagatatctgcccagctttagtgctg 538

                                                                       
Query: 339 attaagggctattatgagtatgaatggtgtgtgttcttttttaactggaaactgaattat 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 attaagggctattatgagtatgaatggtgtgtgttcttttttaactggaaactgaattat 598

                                                                       
Query: 399 caaaggcaaagtagataccccagtttgagattaaatatcaactatgacatttcaccaaca 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 caaaggcaaagtagataccccagtttgagattaaatatcaactatgacatttcaccaaca 658

                                                                       
Query: 459 tgctttggccttgcgtttaacagtgtgcatcaacatttctcaactagactttctcgtatt 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 659 tgctttggccttgcgtttaacagtgtgcatcaacatttctcaactagactttctcatatt 718

                                                                       
Query: 519 acaagcatcagtgtgaaattaggtggagaatccactgtctatgattatatattgatagca 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 acaagcatcagtgtgaaattaggtggagaatccactgtctatgattatatattgatagca 778

                                                                       
Query: 579 ccactctgaccagccaaatgtttccttaagatgaatatgagaaagccaatgaaaatactt 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ccactctgaccagccaaatgtttccttaagatgaatatgagaaagccaatgaaaatactt 838

                                                  
Query: 639 ttttttaatgtaaggataagttcacaaattaaatacaga 677
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ttttttaatgtaaggataagttcacaaattaaatacaga 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no386_f08.g1 MSMg01no386_f08.g1 CHROMAT_FILE:
MSMg01no386_f08.g1 PHD_FILE: MSMg01no386_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:07 2005
         (617 letters)



>mm_chr8_101754464_101755480
          Length = 1017

 Score = 1170 bits (605), Expect = 0.0
 Identities = 614/617 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcttgggatttcttctatgcacatgtctatgccaaactatgtctatgacatttcctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 tttcttgggatttcttctatgcacatgtctatgccaaactatgtctatgacatttcctta 758

                                                                       
Query: 61  ggatttgtttcagggtaatctctcttgaaaacctgcccatgaccactctgtgctagacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggatttgtttcagggtaatctctcttgaaaacctgcccatgaccactctgtgctagacca 698

                                                                       
Query: 121 aaagaggggcccatgcttgctgctcctctattcgcttgagttcctgagtcaatatatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aaagaggggcccatgcttgctgctcctctattcgcttgagttcctgagtcaatatatatg 638

                                                                       
Query: 181 ttgccttctcttttgttccccacaaaactctctgcttctttagtacagggacttttcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 637 ttgccttctcttttgttccccacaaaactctctgcttctttagtacacggacttttcatt 578

                                                                       
Query: 241 agcatatatgctgccattcaggagaggtctatgtgtgcagttgttataaaacatgtgaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agcatatatgctgccattcaggagaggtctatgtgtgcagttgttataaaacatgtgaga 518

                                                                       
Query: 301 agaggttttctttctgttatccatgggtctaattacctgagctagctgattaattggtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 517 agaggttttctttctgttatccatgggtctaattacctgagctagctgattaattggtga 458

                                                                       
Query: 361 ttcctctgttattttatattctgagaagttaagtgtgatagactaaaatattcctttgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttcctctgttattttatattctgagaagttaagtgtgatagactaaaatattcctttgat 398

                                                                       
Query: 421 atttatgttctggcttttacagcagacaacttttcaaagtacattcagttgtacttcagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atttatgttctggcttttacagcagacaacttttcaaagtacattcagttgtacttcagc 338

                                                                       
Query: 481 aaaactcaagtgctacatgctgtattatattattaaccttttgtttcatatttctttgat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaaactcaagtgctacatgctgtattatattattaaccttttgtttcatatttctttgat 278

                                                                       
Query: 541 atggttcctttgcacattccttaagctcacagaagtctaataaatatctttctgatgaaa 600
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 277 atggttcctttgcacattccttaagctcacagaagtctaatagatatctttctgatgaaa 218

                            
Query: 601 gctacaaaggcatctta 617
           |||||||||||||||||
Sbjct: 217 gctacaaaggcatctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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