BAC Information

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BAC

Clone NameMSMg01-386H10
Chromosome8 (Build37)
Map Location 104,259,468 - 104,260,086
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386H10.T7 (MSMg01no386_h10.b1)MSMg01-386H10.TJ (MSMg01no386_h10.g1)
ACCAG489425AG489426
length693724
length of high quality
(start - end)
244 (51 - 294)620 (77 - 696)
definitionCHROMAT_FILE: MSMg01no386_h10.b1 PHD_FILE: MSMg01no386_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:17 2005CHROMAT_FILE: MSMg01no386_h10.g1 PHD_FILE: MSMg01no386_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTTTTTCGTACGTGCCGCGGAATTCCATGTTTTTCCCAAAAAAC
CCATTTTTTTAATATGGTTATTTGGTTTTCTGGAGTCTAACTTCTTAGTT
CTTTGTATATATTGGATATTAGCCCTCTATAGAATTTAGGATTGGTAAAG
ATCTTTTACCACTCAGTTGGTTGCCTTTTTGTATAACTGACAGTGTCTTT
GGCCTTACAGAAGCTTTGCCATTTTATGAGGTACCATTTGTTAATTCTTG
ATCTTACAGTACAAGCCATTGGTGTTCTGTTCATGAATTTTTANGCTTTG
TTCATGTTTGAGGCTCTTCACCACTTCCTCCTCTATAAGTTTCACTCTCT
TTGGCTTTATTTGGAGGTCCACTTAGACTTAAGCTTTGTGCAACGAGATA
AGAATGGACCAAGTCCCCACTAAATACCCATGGAAAGAGTTACAGAGACA
AAGTTTGGAGCTGAGACAGAAGGAAAGACCATCCAGAGATTGCCTCATCC
GCGGATCCATCCCATATACAATCACCAAAACCAGACACTATTACATATGC
CAGAAAGATTTTGCTGACAGGACGCTGACATAGCTCTCTCTTGTGAGGCT
ATGCCGTTGCCTGGCAAATACAGAAGTGGATTCTCACAGCCATCTATTGG
ATGGAACACAGGGCCCCTAATGAAGGAGCTAGATAAAGTACCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATACTGAGTGCTAAAATATTGTT
TTTGTATTTCAGTCAAGATCATCTTCCAGTATTGTGAACAAGAACATATA
TGGCTATAATACTGCGTTATGCTGGTCAATAAAGTAAGAAAAAAAAAAAG
GAAACCAACAAACCAACAAAACAAAGCAAAGCAGAAAACAAACAAACCAT
AATGCAAATATTTTTCAGTATTGTGTTAAAAACAAAATGAGTAGAAATTA
TACAAACTATTTTCAAAACTCTGCTCTGCTCTGCTCTTAAGTTTATTCAA
ACATTGTCTAAACCTGAGGTTCATGCTTCTTGGAAAAGAGAACCAAATCA
CTTCTGAGTGCTCATTTGCAAATATCCCTTTGCATAAGCACATTAATGAT
CAAATATTAGGTTACCCTTTTGTGACATTTTCTGAGCTTTAATTTTTATT
TAATTGAAAGTATGTTAGAACTGCTGTAACATTTAGAAACATGGCTCAGG
GAAGGACATACTCTGTCTTCTAAAGTACATATTTATCCACCAGCCTAACA
TTGTAAGACAACTGTGCTGTCTGTTTAAGAAAATTTTATAGATTTGATTT
TAATGGATAAAGTTATACTTTCTATTAATCATTCATTAACATAGGTAATA
ATTAATAAAGAGATTAAGTAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_h10.g1 MSMg01no386_h10.g1 CHROMAT_FILE:
MSMg01no386_h10.g1 PHD_FILE: MSMg01no386_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:17 2005
         (620 letters)



>mm_chr8_104259268_104260287
          Length = 1020

 Score = 1168 bits (604), Expect = 0.0
 Identities = 616/620 (99%), Gaps = 1/620 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatactgagtgctaaaatattgtttttgtatttcagtcaagatcatcttccagtattgtg 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatactgagtgctaaaatattgcttttgtatttcagtcaagatcatcttccagtattgtg 260

                                                                       
Query: 61  aacaagaacatatatggctataatactgcgttatgctggtcaataaagtaagaaaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaagaacatatatggctataatactgcgttatgctggtcaataaagtaagaaaaaaaa 320

                                                                       
Query: 121 aaaggaaaccaacaaaccaacaaaacaaagcaaagcagaaaacaaacaaaccataatgca 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aa-ggaaaccaacaaaccaacaaaacaaagcaaagcagaaaacaaacaaaccataatgca 379

                                                                       
Query: 181 aatatttttcagtattgtgttaaaaacaaaatgagtagaaattatacaaactattttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatatttttcagtattgtgttaaaaacaaaatgagtagaaattatacaaactattttcaa 439

                                                                       
Query: 241 aactctgctctgctctgctcttaagtttattcaaacattgtctaaacctgaggttcatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aactctgctctgctctgctcttaagtttattcaaacattgtctaaacctgaggttcatgc 499

                                                                       
Query: 301 ttcttggaaaagagaaccaaatcacttctgagtgctcatttgcaaatatccctttgcata 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 ttcttggaaaagagaaccaaatcacttctgagtgctcatttgtaaatatccctttgcata 559

                                                                       
Query: 361 agcacattaatgatcaaatattaggttacccttttgtgacattttctgagctttaatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agcacattaatgatcaaatattaggttacccttttgtgacattttctgagctttaatttt 619

                                                                       
Query: 421 tatttaattgaaagtatgttagaactgctgtaacatttagaaacatggctcagggaagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatttaattgaaagtatgttagaactgctgtaacatttagaaacatggctcagggaagga 679

                                                                       
Query: 481 catactctgtcttctaaagtacatatttatccaccagcctaacattgtaagacaactgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 catactctgtcttctaaagtacatatttatccaccagcctaacattgtaagacaactgtg 739

                                                                       
Query: 541 ctgtctgtttaagaaaattttatagatttgattttaatggataaagttatactttctatt 600
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 740 ctgtctgtttaagaaaattttatagatttgattttaatggataaacttatactttctatt 799

                               
Query: 601 aatcattcattaacataggt 620
           ||||||||||||||||||||
Sbjct: 800 aatcattcattaacataggt 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)