TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGACAGCCACGGCTACACAGAGAAACCCTGTCTCAATAAATAAA
TAAATAACCCACTTCCAGTGGATTCGCTGTTACACTTCTTTTCTTTTTCA
GATAACATGTATCTTACTGAGAACCAATATGAGATTATGCATCTGTTACT
CTTCCAGTGTACACTCAGGGGCATTAGTGTCTGTCTTAGTCAGGGTTTCT
ATTCCTGCACAAACATCAGGACCAAGAAGCAGTTGGGGAGGAAAGGGTTT
ATTCAGCTTACATTTCCACATTGCTGTTCATCACCAAAGGAAGTCAGGAC
TGGAACTCAGGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGG
GATGTTCCTTACTGGCTTACTTCCACTGGGTTCTCAGCTTGCTCTCTTAT
AGAACCCAAGACTAACAGCCCAGGGATGGCTTTACCCACAAAGGGCTCTC
CCAACTTGATCACTAATAGAGAAAATGCCCCACAGCTGGATCTCATGGAG
GCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTTGTGTN
CAGTTGACATCCAAAACCAGCCAGTACAATGTCTTTGACTGTTCCCACCT
TGATANGTTTAGTATGATTAACAAAGGNTGGCTTGGTTAAACCCATCATT
TTTTCTCCCTTTATTAATG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGAAAAGCCTATGCTATTAGAAAT
AAAAAGCATATTTTGCATATTTAGGTGCAATGATACATTGTTTCTTTTGA
GACAAGATCTTGCTATATAGCCCAGGTTGGTCTGAAACCTGTGATCTTTT
TAGGTTAGTCTCCCTAACCAGAGGTTATAGAGGGCCTGGCTCTTTTATCT
ATTTAATTTATACTTTCCTCTTTTTTTTTTTTAAAGATTTATTTATTAAT
TATATGTAAGTACACTGTAGCTGTCCTAGATACTCCAGAAGAGGGCATCA
GATTTCATTAGGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAA
CTCGGGACCTTTGGAAGAGCAGTCAGCGCTCTTAACCACTGCACCATCTT
GCCAGTCCCCTATACTTTCCTCTTTTATTGGTTAAGAAATACATACTAAG
AAGATGGCTCTATGGGTATAGTACTTGCCACATAACCCTAATAACTTGAA
TTCAGATTCCCCAAAATTGTAAATGTAAAATTTTACAAGAATTTAAAAGC
AACTTGTGGCAGTGCACATCTATAATTTTAGCACTGCAGAAATACAAGGA
ACCTTGGAGTTCAGTAGCCCTCTAGCCTAGCAGAATAGATGAGTTCTAGG
CTAAATAAGAGACCCTGCCTTGCCCGGGTGGTGGTG

Query= MSMg01no386_k04.b1 MSMg01no386_k04.b1 CHROMAT_FILE:
MSMg01no386_k04.b1 PHD_FILE: MSMg01no386_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:29 2005
         (554 letters)



>mm_chr8_77509854_77510807
          Length = 954

 Score =  845 bits (437), Expect = 0.0
 Identities = 528/579 (91%), Gaps = 36/579 (6%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttccaggacagccacggctacacagagaaaccctgtctcaataaataaataaataa---- 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
Sbjct: 176 ttccaggacagccagggctacacagagaaaccctgtctcaataaataaataaataaatag 235

                                                                       
Query: 64  ----------------------------cccacttccagtggattcgctgttacacttct 95
                                       ||| ||||||||||||||||||||||||||||
Sbjct: 236 atagatagataaataaataaataacaaacccgcttccagtggattcgctgttacacttct 295

                                                                       
Query: 96  tttctttttcagataacatgtatcttactgagaaccaatatgagattatgcatctgttac 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tttctttttcagataacatgtatcttactgagaaccaatatgagattatgcatctgttac 355

                                                                       
Query: 156 tcttccagtgtacactcaggggcattagtgtctgtcttagtcagggtttctattcctgca 215
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 356 tcttccagtgtacactcagggacattagtgtctgtcttagtcagggtttctattcc-gca 414

                                                                       
Query: 216 caaacatcaggaccaagaagca-gttggggaggaaagggtttattcagcttacatttcca 274
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 415 caaacatcaggaccaagaagcaagttggggaggaaagggtttattcagcttacatttcca 474

                                                                       
Query: 275 cattgctgttcatcaccaaaggaagtcaggactggaactcaggcag-gtcaggaagcagg 333
           ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 475 cattgctgttcatcaccaaaggaagtcaggactggaactcaagcagag-caggaagcagg 533

                                                                       
Query: 334 agctgatgcagaggccatggagggatgttccttactggcttacttccactgggttctcag 393
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 534 agctgatgcagaggccatggagggatgttccttactggcttgcttcccctgggttctcag 593

                                                                       
Query: 394 cttgctctcttatagaacccaagactaacagcccagggatggctttacccacaaagggct 453
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 594 cttgctctcttatagaacccaagactaacagcccagggatgactttacccacaaagggcc 653

                                                                       
Query: 454 ctcccaacttgatcactaatagagaaaatgccccacagctggatctcatggaggcatttc 513
           ||||| |||||||||||||| |||||||||||  ||||||||||||  ||||||||||||
Sbjct: 654 ctccccacttgatcactaattgagaaaatgccttacagctggatcttgtggaggcatttc 713

                                                  
Query: 514 ctcaactgaagctcctttctctgtgataactccagcttg 552
           |||||||||| ||||||||||||||||||||||||||||
Sbjct: 714 ctcaactgaaactcctttctctgtgataactccagcttg 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)