Query= MSMg01no386_o10.b1 MSMg01no386_o10.b1 CHROMAT_FILE:
MSMg01no386_o10.b1 PHD_FILE: MSMg01no386_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:48 2005
(695 letters)
>mm_chr8_113377758_113378852
Length = 1095
Score = 1075 bits (556), Expect = 0.0
Identities = 665/728 (91%), Gaps = 49/728 (6%)
Strand = Plus / Plus
Query: 5 ggaattctaaagaattacgcttaagtgctagtggaggaatttttttttttt--aaatcaa 62
|||||||||||| || |||||||||||||||||||| |||||||||||| |||||||
Sbjct: 180 ggaattctaaag---taggcttaagtgctagtggaggatttttttttttttttaaatcaa 236
Query: 63 aggcaagtgtcttcctacctcaaggtatggactagaagtagattcacccacttcaaatca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aggcaagtgtcttcctacctcaaggtatggactagaagtagattcacccacttcaaatca 296
Query: 123 aacagataatccccaacagatgtgccattcatttctggattattgtagctc-attccaga 181
||||||||||| |||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct: 297 aacagataatctccaacagatgtgccatccatttctggattattgtag-tccattccaga 355
Query: 182 tatagtcaggttgacaatagccatcacaagaagtaattatttagtaggatgatggcatgg 241
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgtagtcaggttgacaatagccatcacaagaagtaattatttagtaggatgatggcatgg 415
Query: 242 ttctttgcccacagagtaggacattggaaaaaa-tcaagttgtttgttt----tttaatt 296
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 416 ttctttgcccacagagtaggacattggaaaaaaatcaagttgtttgtttgttttttaatt 475
Query: 297 ctttggatatagtgctagaaaagaatgtaggacctcatgcatactaggcaaacactctat 356
||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 476 cttcagatatagtgctagaaaagaatgtaggacctcatgcatactcggcaaacact--at 533
Query: 357 cactgagctatgtccttagccctcactagcctgactctaactcacagaagccgtaagctt 416
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cactgagctatgtcctcagccctcactagcctgactctaactcacagaagccgtaagctt 593
Query: 417 gagagtctcctgctgcagcttcacaagtttctgggtttgtggccatca------------ 464
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gagagtctactgctgcagcttcacaagtttctgggtttgtggccatcaacaacaggccag 653
Query: 465 -----------------gtaacaggtgacaagtcctgtgttgtcctttgaggcagcgctg 507
|||| |||||||||||| ||||||||||||||||||||| |||
Sbjct: 654 gctgtttgtagccatcagtaagaggtgacaagtcttgtgttgtcctttgaggcagcactg 713
Query: 508 agctttgtgaccctggttggctggatatttgctgggtagaccaggctagccttgagactt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 agctttgtgaccctggttggctggatatttgctgggtagaccaggctagccttgagactt 773
Query: 568 cagtacaatcctcctgcctctgcctctgcctctgcctccctaggggcacaggagttaaca 627
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 774 cagtacagtcctcctgcctctgcctctgcctc------cctaggggcacaggagttaaca 827
Query: 628 aattctgtttctgttgttaattgattctgcatttactataacctggaagaattaatacat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aattctgtttctgttgttaattgattctgcatttactataacctggaagaattaatacat 887
Query: 688 gtattcac 695
||||||||
Sbjct: 888 gtattcac 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_o10.g1 MSMg01no386_o10.g1 CHROMAT_FILE:
MSMg01no386_o10.g1 PHD_FILE: MSMg01no386_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:48 2005
(670 letters)
>mm_chr8_113564953_113566023
Length = 1071
Score = 1201 bits (621), Expect = 0.0
Identities = 658/673 (97%), Gaps = 7/673 (1%)
Strand = Plus / Minus
Query: 1 actatgtagaccaggctagcctcaaacgcacagagatcagcctgcccctgcctcctgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 actatgtagaccaggctagcctcaaacgcacagagatcagcctgcccctgcctcctgaat 904
Query: 61 gctgggattaaaggcgtgcgccaccacacacagagccttattcttaagtagaaagcagac 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gctgggattaaaggcgtgtgccaccacacacagagccttattcttaagtagaaagcagac 844
Query: 121 agacggttcaggaagacattctgtgagataaggctggtttttatataggtccaccccgtc 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 843 agacggttcaggaagacattctgtgagataaggttggtttttatataggtccaccccatc 784
Query: 181 ccagggagccatcggaagcctgccagcgcccagaatgtccaggagcacctgaagcacagg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 783 ccagggagccatcggaagcctgccagcgcccagaatgtccaggagcacctgaagtgcagg 724
Query: 241 gccgttctccggctccaaaagtaaagatcgcagaccacctttggccgagaaggtctggtt 300
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gctgttctccagctccaaaagtaaagatcgcagaccacctttggccgagaaggtctggtt 664
Query: 301 aagaaaaggaactgcacatagcag---ggagcagggcccacactacctgttatactggat 357
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 663 aagaaaaggaactgcacatagcagggaggagcagggcccacactacctgttatactggat 604
Query: 358 gaacacgaggttccagatctccagcacattggggtcatcctggttgacaaggtgtgcggc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gaacacgaggttccagatctccagcacattggggtcatcctggttgacaaggtgtgcggc 544
Query: 418 gtccctgccaccaatgcggtcatagtggatctcgctgcagggaccacaggggcccgtgtc 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 543 gtccctgccaccaatgcggtcatagtggatctcgctgcagggaccacaggggcctgtgtc 484
Query: 478 acccatctcccagaagttgtccttcatgttgccagggaggattctggcttcatccagtct 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acccatctcccagaagttgtccttcatgttgccagggaggattctggcttcatccagtct 424
Query: 538 gcacggaatgaggaagagaaacccacttgaagccgtcgac-agaaatccctccaagactt 596
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 423 gcacggaatgaggaagagaaacccacttgaagc---cgacaagaaatccctccaagactt 367
Query: 597 gcttctaccacacaacgcatccctatgagtccttatgaagaagtaagtcccactgcctgg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcttctaccacacaacgcatccctatgagtccttatgaagaagtaagtcccactgcctgg 307
Query: 657 caagcactccttc 669
|||||||||||||
Sbjct: 306 caagcactccttc 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space: 700260
Effective search space used: 700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
