BAC Information

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BAC

Clone NameMSMg01-387D15
Chromosome8 (Build37)
Map Location 74,670,803 - 74,671,262
singlet/doubletsinglet
Overlap geneTpm4
Upstream geneLOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374
Downstream geneRab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387D15.T7 (MSMg01no387_d15.b1)MSMg01-387D15.TJ (MSMg01no387_d15.g1)
ACCAG490009AG490010
length793775
length of high quality
(start - end)		240 (43 - 282)460 (74 - 533)
definitionCHROMAT_FILE: MSMg01no387_d15.b1 PHD_FILE: MSMg01no387_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:13 2005CHROMAT_FILE: MSMg01no387_d15.g1 PHD_FILE: MSMg01no387_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTACTAATTCCACTCTGGTCCTGGGCTTTTTTTTGTTGGGAGGTTTT
AATGACTTCTATTTCCTTAGGGGTTGTGGGGTTGTTTAGTTTACCTGATC
TTGATTTAACCTTGGTATGTAGTATCTGTCTAGAAAATCATCATTTCCAA
GAAGCAGTTTTGTTGATTCTTTTTATTGTTTTCTTTGTTTCTAATTGGTT
AACTTCTCCTCCTCTTGCATGCGCTTGCTTCTCTTTTGCTCTCAGGACTC
TCACGTGCGTTGTTAACTCCGCTATTTTATGATCTTCCCAATTTCTTTAC
GTAGGTGCTTAGCACTATGACCTTTCCTCCTAGCACTGTTCTCATTGTCC
CCCATGAGTCTGGCTCTGCTGTTCCTTCCATCTCACTATTTTCTACACAG
CCACTCCTTCTCTTTCCCTATATCTTCCCTGACCACAAGTTTGTTTAACT
TACCGTTTATTATTTCCTGCTTCTTCTTACTTATCGCCCTCCCCTTCCCT
AACCCACACTTACCACCGTTCCCCCTCGCCCGGTACACTACCTTCCCTAT
CCATTTCCCCTCACCCCCCCCCCATTCCCCTATCTCTACTTATTCCTTCA
CTCCCTTACCCCATTCCCACCTCTCTTCTCCCTCGTTGACATCTCTCACA
CCGCTTCCTCCTCCTCATCTCTCCTTTTTTTCCCCTCCTATCCCCCTAAT
CCCCTAACAACCTTATCCACTTTCTTCCACCCTTTTCCCACTN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGAAGACTTCACTCTGGAAAAAAAGCC
CAGCTCTGTTCCTCCACAGACCTACTCACTCAACTTTGATATGTCACTTA
GGGAAGTGGAGATTCCTACCTTCCAGGTCATCGATTGTCTTCTCCAGTTT
AGAAACTGTCCTTTCTGCAAACTCAGCTCGGGTCTCAGCCTAGGGAAGAA
AAGAGTCACTATCCTGCTTCAGATTAGCCCCTCAAAATGTAGGGCAAAGC
TGGGTGTGGTCACTCACCTCCTTCAGCTTGTCAGACAGAAGCTTGATTTC
TTCTTCATATTTATCCTCCTTTTCAGAATACTATGGGAGAAAAACAAACC
AACAAACCCCAAAGGTGGTCCTTAAAAGAGGGAAAAAGGCTGGAGAGATG
CCTCAGAGGTTAAGGGCTCTTGTTGCTTTTACAGAGGGCTGGGGTTCAGG
ACCCAGTACCCACATGGACGCTCACAACCATTTTGTAAGTTCAGTGCCAG
GGGATCTGACACCCTGCCCTACCGTGAAGACATTACTGCTGGGAAGGCAC
TTTCCCTATGAAAAAAAAACTTACGGGAAGGAAAAAGGACTGGGGAGATG
GATCTCCGAGTGAATCTTTTGCTGGGATGAATCCTCACACTCCAATAAAG
TGGGAAGTGGGGGGGCCCCCTTCCCCAAAAGATCTTCTTCGAAAACATGG
GCACTTATATATTTTTTATTTGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_d15.g1 MSMg01no387_d15.g1 CHROMAT_FILE:
MSMg01no387_d15.g1 PHD_FILE: MSMg01no387_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:13 2005
         (460 letters)



>mm_chr8_74670699_74671558
          Length = 860

 Score =  890 bits (460), Expect = 0.0
 Identities = 460/460 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaagacttcactctggaaaaaaagcccagctctgttcctccacagacctactcactcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaagacttcactctggaaaaaaagcccagctctgttcctccacagacctactcactcaa 505

                                                                       
Query: 61  ctttgatatgtcacttagggaagtggagattcctaccttccaggtcatcgattgtcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttgatatgtcacttagggaagtggagattcctaccttccaggtcatcgattgtcttct 445

                                                                       
Query: 121 ccagtttagaaactgtcctttctgcaaactcagctcgggtctcagcctagggaagaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccagtttagaaactgtcctttctgcaaactcagctcgggtctcagcctagggaagaaaag 385

                                                                       
Query: 181 agtcactatcctgcttcagattagcccctcaaaatgtagggcaaagctgggtgtggtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtcactatcctgcttcagattagcccctcaaaatgtagggcaaagctgggtgtggtcac 325

                                                                       
Query: 241 tcacctccttcagcttgtcagacagaagcttgatttcttcttcatatttatcctcctttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcacctccttcagcttgtcagacagaagcttgatttcttcttcatatttatcctcctttt 265

                                                                       
Query: 301 cagaatactatgggagaaaaacaaaccaacaaaccccaaaggtggtccttaaaagaggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagaatactatgggagaaaaacaaaccaacaaaccccaaaggtggtccttaaaagaggga 205

                                                                       
Query: 361 aaaaggctggagagatgcctcagaggttaagggctcttgttgcttttacagagggctggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaaaggctggagagatgcctcagaggttaagggctcttgttgcttttacagagggctggg 145

                                                   
Query: 421 gttcaggacccagtacccacatggacgctcacaaccattt 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gttcaggacccagtacccacatggacgctcacaaccattt 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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