BAC Information

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BAC

Clone NameMSMg01-388C08
Chromosome8 (Build37)
Map Location 73,615,317 - 73,615,904
singlet/doubletsinglet
Overlap genenone
Upstream geneNcan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s
Downstream geneLOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388C08.T7 (MSMg01no388_c08.b1)MSMg01-388C08.TJ (MSMg01no388_c08.g1)
ACCAG490710AG490711
length773759
length of high quality
(start - end)		591 (33 - 623)544 (83 - 626)
definitionCHROMAT_FILE: MSMg01no388_c08.b1 PHD_FILE: MSMg01no388_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:24 2005CHROMAT_FILE: MSMg01no388_c08.g1 PHD_FILE: MSMg01no388_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:24 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CGGCCGCTATACGACTACTATATTCAGAGGATCCGCGGAATTCAACGTTT
TTTCTAGTCTTGTTGGCCCATGGATTGCATCCCAGAACTTGGGAAGGAGG
ACATGAACAGATTTCTGTGAGTTAAGGCCAACATGCTCCATAGAGCAGTT
TTCAGACCAGCATGGATACATAGTGAGATCCTGATTCAAAAAAATGTTGT
TTGTAAACATCTAAAGTAATATACAGAAGGGACACAAATATAAAGTACTT
AAAACACTTGCTAAATATTTTTCTTATGAATAGCACAATAATGCTAACTT
TAAAATCTATGTCACAGTACTGGATCGTCAGCTCAGAGAACTGAAGTGAA
GCATGTCAGGTTCAATGAAGGTAAGGTTTTTATAGTGAATATAAATATGG
TATATAGTAGCCAGTCCTATTACCCTAAAGAAGAGTAGAGATTAAGCTTC
TTTCCCACTGAGTCCAGAAAAGGCAGCTCAACTAGCAGAAAGGAATCCAA
ATGCAGACAACAGTGTGAAGCGGTCCTCCCTTCAGTTTATAGAGAACTCA
CATGAAGACCAAGCTGCACATCTGCTACATATNGGNGAGGGGGTCTATGT
GCAGCCCATGCATGCTCTTTGATTGNTGGNTCAATCTCTGTGAGCCCTCA
TGGGCCCCAGCTACTTGATTGTGTAGGTTTTCTTGTGGGGCCCCTGACCC
CTCCGTCCCAATGTTCCCCCTTGAGTTCAAAGGGCCTTCCCCAACTCTTC
CAAAGAACCCCCAACTCCCCTTG

NNNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTAAAAGTTGCAAATT
GTATGAAAACCTTTCAAGAGTACAGAACATATTAAGTAGGAAGGAAAAGT
GTAATACTGCTGCAGAAGAACAATGTTATAGGACTGTAGTGTTCACTCTT
GTTGACAATCAAATTAGTGTAAATGAAGCGAAACATTGTTTTAGTTTCTG
TTGTATACTGACTCACTTTACTGGTCTGCTCTTTATCTTACAGCATCCTT
TGGGAACCTATGCTCACAGCAGGATATTGGGAATGTGCTGGATCTTCTAG
TAGGGTGAACATTTACAGTTACTCCTGACACTTCTTAGTTTACCCAGTGG
TCTTCCAAGGATGTTTTAAAGGCTAACACTACTTTGTAACAACCTTCGAT
CCTTTTAATATGGATCCACAAGTCAAGGCATTTCCAATTCATAAATTTAA
TTTTAAATATTTGTAATTATCATCTTAGACACTAATAAATGTGTATTATT
CCATTCATCCATATGCACAGAACATACATAGGCCATCTCGTACTAACTGC
CAAGTGGCCCTTTAGTTCCGTTTTAATTTAAGGAATTTTAAAGCCAAAGC
AGTTAAATGACGAGGCATAGACTCCTCGTTTATAATACGCCGTGACTTAC
AAAGATGATGTAATCAACCCTATCTGTTTGGGCCTCCCCTGAAAAAAAAG
GTTGTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_c08.b1 MSMg01no388_c08.b1 CHROMAT_FILE:
MSMg01no388_c08.b1 PHD_FILE: MSMg01no388_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:24 2005
         (591 letters)



>mm_chr8_73615115_73616105
          Length = 991

 Score =  919 bits (475), Expect = 0.0
 Identities = 560/590 (94%), Gaps = 6/590 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaacgttttttctagtcttgttggcccatggattgcatcccagaacttgggaagg 65
           ||||||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 203 gaattcaacattttgtctaatcttgttggcccatgcattgcatcccagaacttgggaagg 262

                                                                       
Query: 66  aggacatgaacagatttctgtgagttaaggccaacatgctccatagagcagttttcagac 125
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 263 aggacatgaacagatttctgtgaggtaaggccaaaatgctccatagagcagttttcagac 322

                                                                       
Query: 126 cagcatggatacatagtgagatcctgattc---aaaaaaatgttgtttgtaaacatctaa 182
           ||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||
Sbjct: 323 cagcatggatacatagtgagatcctgattcaaaaaaaaaatattgtttgtaaacatctaa 382

                                                                       
Query: 183 agtaatatacagaagggacacaaatataaagtacttaaaacacttgctaaatatttttct 242
           ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 383 agtaagatacagaagggacacaaatataaagtacttaaaacacttgctaaatgtttttct 442

                                                                       
Query: 243 tatgaatagcacaataatgctaactttaaaatctatgtcacagtactggatcgtcagctc 302
           ||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 443 tatgactagcacaataatgctaactttaaaatctatgtcacagcactggatcatcagctc 502

                                                                       
Query: 303 agagaactgaagtgaagcatgtcaggttcaatgaaggtaaggtttttatagtgaatataa 362
           |||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 503 agagaactgaagtgaagcatgtcaggtttaacgaaggtaaggtttttatagtgaatgtaa 562

                                                                       
Query: 363 atatggtatatagtagccagtcctattaccctaaagaagagtagagattaagcttctttc 422
           ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 563 atatggtatatagtagctagtcctattaccctaaataagagtagagattaagctcctttc 622

                                                                       
Query: 423 ccactgagtccagaaaaggcagctcaactagcagaaaggaatccaaatgcagacaacagt 482
           |||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 623 ccactgagtccagacaaggcagctcaactagcagacaggaatccaaatgtagacaacagt 682

                                                                       
Query: 483 gtgaagc-ggtcctcccttcagtttatagagaactcacatgaagaccaagctgcacatct 541
           ||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 683 gtgaagcagg-cctcccttcagtttatagagaacccacatgaagaccaagctgcacatct 741

                                                             
Query: 542 gctacatatnggngagggggtctatgtgcagcccatgcatgctctttgat 591
           ||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct: 742 gctacatatggg-gagggggtctatgtacagcccatgcatgctctttgat 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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