BAC Information

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BAC

Clone NameMSMg01-388P04
Chromosome8 (Build37)
Map Location 89,245,984 - 89,246,323
singlet/doubletsinglet
Overlap genenone
Upstream geneItfg1, LOC100040798, Phkb, LOC671665, LOC100040165, Abcc12, Lonp2
Downstream geneSiah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik, Zfp423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388P04.T7 (MSMg01no388_p04.b1)MSMg01-388P04.TJ (MSMg01no388_p04.g1)
ACCAG491320AG491321
length1,279755
length of high quality
(start - end)
---341 (66 - 406)
definitionCHROMAT_FILE: MSMg01no388_p04.b1 PHD_FILE: MSMg01no388_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:23 2005CHROMAT_FILE: MSMg01no388_p04.g1 PHD_FILE: MSMg01no388_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACAGAATGAGCACACCAATCAGCGACCGCACAGTGATAAAGAGAGCTTGT
CGGCGTGCTTCGCTCTCTGCTCGTCTCCGCACTAGCCTACCGTGTGTGCC
TGCCTGTTTTTGTGTATCGTGTTTTAAATATATTAATAATTATTACTTAC
ATTTCTGTGTAACATTTATATTATCGCGCGTTACTACGATAAGATATATC
TCGCCGATATAACGTTAGTAGGCACATAATATCGCTAAACAGCACATTGC
ATTACAAAGAACAACTAACTCACCACATACCTTGCATTACGCAGCTACGT
GCNNCCGAACGGTGTATACGCTGTATATATATCATATCAGCTATCTCACA
CTCCCACTCACATCCCATACTCTCTTTCTCTTTATACTATACTTACTATA
TATATACTATTCTATACATGCCACTACACGCTCCCGTACAATGATACTCT
CTTGCTATATACTACCTACCCTCTCATACGTTACAGCATACCCCATCAGC
AACTATCATCTACGCACCGTCTTGTTATATCATGTCACTATACTGTGCTA
ACTCACTAATGCGCACCAAATACGTGACTATCATACTATAATCTACAATT
ATTCCGTATCCGATCAATTACGACGTCTACGTCCACACTACGTATTATTT
CATNCGATACCGGATATTATATCAGACTCACATCAGATTATTATAAAGAC
AGCCCAACCATACTATCCGTGGTCCGGCCGCCATCTTACAGTACCTCTAC
ATTCTGCTCAAGCAATCAATTCTATATACTACGAGTAATTATTGTTATTC
CTATTTACTCATCACCACGATACTACTCATATACAAATACGACACTAGCA
TGACAACAATATAAACAAAATTATANCTACACCTCTAACTATAATATGCG
CAGCAGAACCCTCACCACCTATACACTCTTCGTGTATATACATGAAATCA
CACATACTAGAATCACTCAACACCTATCTACCCTCTATCCACCNNACAAC
AACATATACATAAGATATAGNACGTNTACAATAGATGTGTTCCGNCGCNC
CTGTTGTTGCCGCGNGGTCTGCCTCCTCCTCTATTTCTCTTCTCTTACNN
NCNCNTNTNCCACCTCGNCNNCTTCTCNNCGCACNCANCAATAGCNGAAC
GCCTCCGGCCCNGCCCCTCTTCTTTCTTATANANTTNTTTAATTTNGCNC
CTCNANGCGCGACCTCTTGTTTCTCCATAAACGAACGCTTTTCTATCATN
NTCGGCAAAACCNCCCTGANNCCNNNNAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCT
CGAAAAACCAAAACACAAGACAAAACAAAACTAAAACTTGGGCTGGCTTG
CCCCCCCCCCCCCATTTATTTTGGGCTTGAACCTAGGGTCTCATGTGTGC
CCTATGAACAAGCATTCCACTGAGCTGAAGTCCTAGCAGAAACATTTTGG
TAACTTGACCAGTCACTGTATTCTTAGTTAAGATTTTGTTTTATCCATCA
AGATTTTTTATTTTTGCTACATATAAATTAGCCTATACATTCTTAGTATC
ATCTATCAGTATGTTTTGGGCATTAATATTTTAAGTCTTGGTATTTTCAT
TGTTGCTCCCCGGAGAGGCTTCAGCAGGACCCAGCAGTATGAAGGGTTTT
GTTTACCCTCTGGCTTTGCTAGTTTTAGCAAGTGAAGGCATATTTTAGGT
GTATTTACCAGCAGGTAAGGTTGACATGTTAACATTTATTAGCTATTAAA
TTTAAATTTAAGTCTTCCTATTCTTGACCCCTACAGAAGAGGAACATAGC
AACATTATTTGTTCCTTTGAGATTTGGCATATAACAGTTAACTCTTAAGA
GTGGGTAGTTTCTGTTTGCACCCTTGACTCTGGGTGTCTGAGGAGTTCTA
TGGTACGTATACGGGCCTCCCTCTTGACTGGCTCTTTTGGCTTTAATCCT
GTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_p04.g1 MSMg01no388_p04.g1 CHROMAT_FILE:
MSMg01no388_p04.g1 PHD_FILE: MSMg01no388_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:23 2005
         (341 letters)



>mm_chr8_89245736_89246475
          Length = 740

 Score =  652 bits (337), Expect = 0.0
 Identities = 340/341 (99%), Gaps = 1/341 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctatacagagaaaccctgtctcgaaaaaccaaaacacaagacaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 caggacagccagggctatacagagaaaccctgtctcgaaaaaccaaaacacaagacaaaa 529

                                                                       
Query: 61  caaaactaaaacttgggctggcttgcccccccccccccatttattttgggcttgaaccta 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 528 caaaactaaaacttgggctggcttg-ccccccccccccatttattttgggcttgaaccta 470

                                                                       
Query: 121 gggtctcatgtgtgccctatgaacaagcattccactgagctgaagtcctagcagaaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gggtctcatgtgtgccctatgaacaagcattccactgagctgaagtcctagcagaaacat 410

                                                                       
Query: 181 tttggtaacttgaccagtcactgtattcttagttaagattttgttttatccatcaagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttggtaacttgaccagtcactgtattcttagttaagattttgttttatccatcaagatt 350

                                                                       
Query: 241 ttttatttttgctacatataaattagcctatacattcttagtatcatctatcagtatgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttttatttttgctacatataaattagcctatacattcttagtatcatctatcagtatgtt 290

                                                    
Query: 301 ttgggcattaatattttaagtcttggtattttcattgttgc 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttgggcattaatattttaagtcttggtattttcattgttgc 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 740
Length adjustment: 9
Effective length of query: 332
Effective length of database: 731
Effective search space:   242692
Effective search space used:   242692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)