BAC Information

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BAC

Clone NameMSMg01-388P19
Chromosome8 (Build37)
Map Location 34,358,724 - 34,359,135
singlet/doubletsinglet
Overlap geneWrn
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream genePurg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388P19.T7 (MSMg01no388_p19.b1)MSMg01-388P19.TJ (MSMg01no388_p19.g1)
ACCAG491349AG491350
length782764
length of high quality
(start - end)
346 (65 - 410)412 (77 - 488)
definitionCHROMAT_FILE: MSMg01no388_p19.b1 PHD_FILE: MSMg01no388_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:26 2005CHROMAT_FILE: MSMg01no388_p19.g1 PHD_FILE: MSMg01no388_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAA
GCTCATGCCCAGCCTGGCTAATAAAAAGCTTTATAAATTTTTATTATTTT
AAAATAACTTGTTATTAGATTTTGAATTTAGTTAATAGTTTTAAAAGTTT
TTTTTTTGTATCATTTTATGTGTATGGCTGTCTTTGCCTGCATGTATGTC
TCTGTACAACTTATGTGATGTATTCCTGAGAGGTGCAGAGGAGGGTATTG
GATCTTCTGGAACTGGTGTTACACACAGTTGAAAGCTGCCATGTGGGTGC
TGGGAATCAAACCTGGGTCCTCTAGAAGAGCAGCCAATGCTCTTAACTGC
TGAGCTATCTTTCCAGCCCTGAATTTAATTTTGATCTTGATTTTTGCTTA
TGTTACCCCCCCCCCCCGACAGTTTAAGGTTGAGCTAAAGTTTGCAGAGC
TGATAATTGTGCAGCTCTGTTTTTCCGACTATCCTCGCCTCTTCACCTCC
ATCCTCTCTACCCCTCCCTCTCCTCCCCTCCCCCTCCCCGATCTCCGCTC
TATTCCCTCTTACTCACGCAATCCCCTTCCCTCCCTTCTTCCTCCCCCCC
CTCTCCCTCCCTTTCCCCCTCTCTCTCCCCTTTCCCTCCCCCTCTCTTCC
TCCCCCCTCCTCCTTTCATCTCCCCTCCCCTCACCCCCCCCCCCTTCCCT
CCCCCTCCCTTACCCCCTCCCCTCTCTTTCTCTCTTCCTCCCCTTCACCC
TATCCCCCTTTCTCCCTCCCCCTCCTTCCCTG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGTTGGGGATTGGGGAACATC
ATTTCTTAAATATTTCTGTAAGGCAAGCAGGGGACAGAGCTTCATGGCAG
AGCTGAGGTTCCTCAGTGGGACAAGAACAAAGAACAAAGGCCCTTTTTAA
TGGGAGCTTTGCCTGCATGTGTGTCTATGCATCATGTGTTTGCATGGTCC
CAACAGAGGTCAGAAGGGGCTGTCAAGAGTCCCTGGAACTGGAGTTACAG
TAAGTTGTGGGTGGCAGAAACGCCTGTCTTCTGGAAGAACAGCCTGGAGT
CCTAACTGCTGAGCCATCTGTCAAGCACGGAGAAGAAACCCCTCCGCTGG
GGGCTACAGAGCTTGGCATGTCTGGTAGGGACTCAGAGGCCGTCAGGGGA
AATGGAGGAGTCAGTCCTTCAGCGGCTGGGAGTAACCATGAAGGACCCGG
TGGCTTTAGACCTGCACGCTCGATTTGAGGATGGGTGAGAAAATATCATC
TGAAAAGAAAACTTTCAGTATACCTTCTGCTGAGAAAAAAAGAATGTTTT
CGTTTTGGTGGTTTTTTAAAAAAAAAAAAGGTTCCAACCCCCCCCGAAGG
GCCCGGCTTGTTTACCGAAACGGACGAAGCCCTTTTTTATCGCCCAACCC
GGCTTTAAACGGCGGAAAAACCCGCCTCTTCCTCGGTAATGGGGGGTTTT
GGTGAATCCCACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_p19.g1 MSMg01no388_p19.g1 CHROMAT_FILE:
MSMg01no388_p19.g1 PHD_FILE: MSMg01no388_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:26 2005
         (412 letters)



>mm_chr8_34358524_34359335
          Length = 812

 Score =  789 bits (408), Expect = 0.0
 Identities = 411/412 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggttggggattggggaacatcatttcttaaatatttctgtaaggcaagcaggggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggggttggggattggggaacatcatttcttaaatatttctgtaaggcaagcaggggaca 260

                                                                       
Query: 61  gagcttcatggcagagctgaggttcctcagtgggacaagaacaaagaacaaaggcccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcttcatggcagagctgaggttcctcagtgggacaagaacaaagaacaaaggcccttt 320

                                                                       
Query: 121 ttaatgggagctttgcctgcatgtgtgtctatgcatcatgtgtttgcatggtcccaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaatgggagctttgcctgcatgtgtgtctatgcatcatgtgtttgcatggtcccaacag 380

                                                                       
Query: 181 aggtcagaaggggctgtcaagagtccctggaactggagttacagtaagttgtgggtggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtcagaaggggctgtcaagagtccctggaactggagttacagtaagttgtgggtggca 440

                                                                       
Query: 241 gaaacgcctgtcttctggaagaacagcctggagtcctaactgctgagccatctgtcaagc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaacgccagtcttctggaagaacagcctggagtcctaactgctgagccatctgtcaagc 500

                                                                       
Query: 301 acggagaagaaacccctccgctgggggctacagagcttggcatgtctggtagggactcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acggagaagaaacccctccgctgggggctacagagcttggcatgtctggtagggactcag 560

                                                               
Query: 361 aggccgtcaggggaaatggaggagtcagtccttcagcggctgggagtaacca 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggccgtcaggggaaatggaggagtcagtccttcagcggctgggagtaacca 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)