Query= MSMg01no389_c19.b1 MSMg01no389_c19.b1 CHROMAT_FILE:
MSMg01no389_c19.b1 PHD_FILE: MSMg01no389_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:41 2005
(420 letters)
>mm_chr8_3581944_3582753
Length = 810
Score = 677 bits (350), Expect = 0.0
Identities = 401/422 (95%), Gaps = 14/422 (3%)
Strand = Plus / Plus
Query: 1 gcaggaggctcacaacaaaaggaaatccaggctccagagaatgtgatgccccctctggcg 60
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 gcaggaggctcacaacaaaaggaaatccaggctccagaggatgtgatgccccctctggca 260
Query: 61 ttctcctgcacatacacacacattcaaactcagccacagtcggctattttcgtttgtttt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ttctcctgcacatacacacacattcaaactcagccacagtcggctat-----tttgtttt 315
Query: 121 gttatatattttttttgacagaagcctctctaagtagcctaaggtggctttgaacccatg 180
||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 316 gttatat-tttcttttgacagaagcctctctaggtagcctagggtggctttgaacccatg 374
Query: 181 atccttctgcctatgcctcccctgtattgggataactagtgtggaccaccacactttgat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 375 atccttctgcctatgcctcccctgtattgggataactagtgtggaccaccacacattgat 434
Query: 241 ccagtgtttatattaactgcacatcaggattataccagttataagcattcaataactaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccagtgtttatattaactgcacatcaggattataccagttataagcattcaataactaca 494
Query: 301 tagggg-ctaatcccaactcc-actagacaggaaatttccataacacagctaatattcca 358
| |||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 495 t-ggggactaatcccaac-cctactagacaggaaatttccataacacagctaatatt--- 549
Query: 359 tgactcattccatgaccatctgtgcctttaaccctacaacacacttttgttattgacctg 418
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 t-actcattccatgaccgtctgtgcctttaaccctacaacacacttttgttattgacctg 608
Query: 419 gc 420
||
Sbjct: 609 gc 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 810
Length adjustment: 9
Effective length of query: 411
Effective length of database: 801
Effective search space: 329211
Effective search space used: 329211
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_c19.g1 MSMg01no389_c19.g1 CHROMAT_FILE:
MSMg01no389_c19.g1 PHD_FILE: MSMg01no389_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:41 2005
(373 letters)
>mm_chr8_3753159_3753931
Length = 773
Score = 636 bits (329), Expect = 0.0
Identities = 359/369 (97%)
Strand = Plus / Minus
Query: 1 ttaagattggtgatgactgcagggatgggggcaatgaacaagggaggggtaatctcagac 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttaagattggtgttgactgcagggatgggggcaatgaacaagggaggggtaatctcagac 510
Query: 61 tgtccctcgcacttgtgagcaaggatgaaaactcacatccagaggtcatggtcccacatg 120
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 509 tgtccctcgcgcttgtgagcaaggatgaaaactcacatccagaggccatggtcccacatg 450
Query: 121 ttcttcatcaataaccaggggaccagaatagcagccttctcccaaaattggtcctgatca 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 449 ttctccatcaataaccaggggaccagaatagcagccttctcccaaaattggtcccgatca 390
Query: 181 tgagtcttagccttgagaccacaagtaaccagaagggttttcagagccctaatttggggt 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 389 tgagtcttagccttgagaccacaagtaaccagaagagttttcagagccctaatttggggt 330
Query: 241 tcattgatggtggaggggaggaaacccatgacaatgagcacaaaggaaacaaatgaggaa 300
|| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcgttgatgatggaggggaagaaacccatgacaatgagcacaaaggaaacaaatgaggaa 270
Query: 301 cagatatgacaaacatgacagagaaagcaacaaaagtcgtgtaccaagcaggggactccc 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 269 cagatatgacaaacatgacagagaaagcaacaaaagtcatgtaccaagcaggggactccc 210
Query: 361 tcaggtgta 369
|||||||||
Sbjct: 209 tcaggtgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
