BAC Information

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BAC

Clone NameMSMg01-389E18
Chromosome8 (Build37)
Map Location 49,913,793 - 50,028,879
singlet/doubletdoublet
Overlap gene2900073C17Rik
Upstream geneWwc2, LOC100040113, Dctd, Odz3
Downstream geneLOC100039866, 4930555F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389E18.T7 (MSMg01no389_e18.b1)MSMg01-389E18.TJ (MSMg01no389_e18.g1)
ACCAG491587AG491588
length841737
length of high quality
(start - end)		164 (73 - 236)467 (88 - 554)
definitionCHROMAT_FILE: MSMg01no389_e18.b1 PHD_FILE: MSMg01no389_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:51 2005CHROMAT_FILE: MSMg01no389_e18.g1 PHD_FILE: MSMg01no389_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,913,793 - 49,913,953)(50,028,413 - 50,028,879)
sequence
NCGTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCTGTTCTGTACTTCGGGTATCAGTCTCATGCTATCAAAATAACA
GTAAGAATGCAGGTGATAATGATAACATTAGTTTACTGCCAATTGTCAAT
CGGGGTTCTCTTCAAGTGATAGGTGGTATTAAGGTTATGGAGAGCCTAGT
ATTTGTGGTGAGGGTGGGTAGGGAAGGAGCTTACTTGGTAAAGTGCTCGT
TTTACAAGCATTGAGGACCTGCAGAATATTCATAAACCATTTTTTTCTTT
TTAAACGCCTGGTGTCATACAGTTTGTTTGCCCTGCCAAAGGCGATGTAC
AAAGTGCTACATGCCTGCCGTTCCTTCTCCGGCCCGCCTACTTCACTTGA
AGGCTAGCCTCATCATACCACCCCCGTTCTCCTCCCCTATACTCTATCTG
CCGCCTCATACCTCATCATGATCCTACCCTTCATCTTGCTCCTTGCTCTA
CCCCCCCTCCCCCTTCCCCTTTCCTTTTCCCTGCCGCTCCCTCTCCTCCC
CTTCCCCTCTTCCTCCTCTCTTTCCCCCTCTTTCCCTTCCCCCCTTCCTC
CCCCTTTGTTCACCCTTCCTCTTTCCTCTCTCTCCCCTTCCCTTCCCCCC
CACCCCCCCTCCTCCGCTCCCTCTCCCCTTCTTCCCCTCTTTTCCTCCTC
TTCTCTTCCCCTCTCTTTTCCCCCCTTTCCCTCCCTCCTCTTCCTCCCTT
TCTCCTCCCCTTCCTTCCTCCCCGTCTCTTTCCTTTCCTCCCCTCTCTCT
TTTCCCCACCCCTTCTCTCCCCCCCTTCCTTTCCCTTCTCG

NNNNNNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGCATTCCAG
GACCACAGAGGTAATGGAGTTACACGGGTCTAAAATACAGGCCCTCTGCA
TCCAGAGAACTAATTCTACCACTATTGTACTATCGAGGTATTTATTTCTA
CTCTAAGAAAGAATTTTGCAGAAATGTACTTATGAGTATGTTTTACTTTT
AAGTGTTTTATTAACAATGAAGAAAAATAGTGAGTATAAAATATAGATTT
GGGCCCAAACCCGACGAATTACATAAAAGGTCAGAAGACTTCTAAGAGAA
ATCATTTTCTCTAAAAAGTTAAAATACTTCTTTACCAAAAGAAATGTAAA
ATCCATGTGATGTTTTGGTTCTGTATCTGTTTTGCTTCTAAGAAACTGAA
TGGGGAGAGGGGCTCAAAGGGGGCACAGCCCTGGCGATGTAAGCACTAGG
TCAGAACTGGGATTCCCAGCATCCACAGAAAGGTCAGGCAGCACCTATCT
CTAACCCTGGTTCTGGGGATTGTTGACATAGATTCCTGGGACTTAACTCT
TATTTCCTGAGAAAGTCTGGAATCATATTTTGCAAAGCCTCCAAACTGGG
CTAAGAAAAAAATCGGGATTCCAAGGTTGAACCCTCCTTTATTTGGGGGG
CCGGGGGGGGGGCTTTTTCTCCGTGCCCGGGGGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_e18.b1 MSMg01no389_e18.b1 CHROMAT_FILE:
MSMg01no389_e18.b1 PHD_FILE: MSMg01no389_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:51 2005
         (164 letters)



>mm_chr8_49913593_49914156
          Length = 564

 Score =  311 bits (161), Expect = 1e-89
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatcagtctcatgctatcaaaataacagtaagaatgcaggtgataatgataacattagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatcagtctcatgctatcaaaataacagtaagaatgcaggtgataatgataacattagt 260

                                                                       
Query: 61  ttactgccaattgtcaatcggggttctcttcaagtgataggtggtattaaggttatggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttactgccaattgtcaatcggggttctcttcaagtgataggtggtattaaggttatggag 320

                                                    
Query: 121 agcctagtatttgtggtgagggtgggtagggaaggagctta 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcctagtatttgtggtgagggtgggtagggaaggagctta 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no389_e18.g1 MSMg01no389_e18.g1 CHROMAT_FILE:
MSMg01no389_e18.g1 PHD_FILE: MSMg01no389_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:51 2005
         (467 letters)



>mm_chr8_50028213_50029079
          Length = 867

 Score =  888 bits (459), Expect = 0.0
 Identities = 465/467 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggcattccaggaccacagaggtaatggagttacacgggtctaaaatacaggccctct 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 667 agaggcattccaggaccacagaggtaatggagttacatgggtctaaaatacaggccctct 608

                                                                       
Query: 61  gcatccagagaactaattctaccactattgtactatcgaggtatttatttctactctaag 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gcatctagagaactaattctaccactattgtactatcgaggtatttatttctactctaag 548

                                                                       
Query: 121 aaagaattttgcagaaatgtacttatgagtatgttttacttttaagtgttttattaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aaagaattttgcagaaatgtacttatgagtatgttttacttttaagtgttttattaacaa 488

                                                                       
Query: 181 tgaagaaaaatagtgagtataaaatatagatttgggcccaaacccgacgaattacataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgaagaaaaatagtgagtataaaatatagatttgggcccaaacccgacgaattacataaa 428

                                                                       
Query: 241 aggtcagaagacttctaagagaaatcattttctctaaaaagttaaaatacttctttacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aggtcagaagacttctaagagaaatcattttctctaaaaagttaaaatacttctttacca 368

                                                                       
Query: 301 aaagaaatgtaaaatccatgtgatgttttggttctgtatctgttttgcttctaagaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaagaaatgtaaaatccatgtgatgttttggttctgtatctgttttgcttctaagaaact 308

                                                                       
Query: 361 gaatggggagaggggctcaaagggggcacagccctggcgatgtaagcactaggtcagaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaatggggagaggggctcaaagggggcacagccctggcgatgtaagcactaggtcagaac 248

                                                          
Query: 421 tgggattcccagcatccacagaaaggtcaggcagcacctatctctaa 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgggattcccagcatccacagaaaggtcaggcagcacctatctctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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