BAC Information

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BAC

Clone NameMSMg01-389F21
Chromosome8 (Build37)
Map Location 67,458,408 - 67,458,812
singlet/doubletsinglet
Overlap genenone
Upstream geneTll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647
Downstream gene3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389F21.T7 (MSMg01no389_f21.b1)MSMg01-389F21.TJ (MSMg01no389_f21.g1)
ACCAG491639AG491640
length781766
length of high quality
(start - end)
413 (51 - 463)69 (88 - 156)
definitionCHROMAT_FILE: MSMg01no389_f21.b1 PHD_FILE: MSMg01no389_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:57 2005CHROMAT_FILE: MSMg01no389_f21.g1 PHD_FILE: MSMg01no389_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGACCAGACTGAATTCTGTACCAAGTCCAAGGCTAGCTT
GAATTACCTCACTAAGACACTGCTACAAAAAGGAAACCTAACTGGGGTAA
GGGATTCAATTGGAGGGACAGTTGAAGACAGAACAAAGACAAAGTATAGT
GACACAGATGTGCGACGATGCCCTGCTGAGACACCGGATGTTAACCTAAA
AATCTCATAAAGGTCAATAAAAGGCTGGTTTTTGAGACAGGGTGTCTGTA
GCTTTGACTGTCCTGGAACTCTCCATAGAGCAGGGTGGCCTAAAACTCAG
AGATGCACTGGTACTCGGGTATCCTGAATGCTGGAACTAAAGGCGTGCAC
CACCACAGCTCTGTAAGATAGCCTCTTATATCCTTCAGTGGCAAAGTATT
TACCTAGCACGTGCAAGGCCTTGAATTTGGACCCTTGTACCACTTGGTGG
GCATGACTGTGGGTGTGGCTTGGTATGAGTACTTGTGCGAGGGGGAAACC
CCAAATCTACAACCCGGCGCCTTGCGGACTTCATCCCCTCTCCCTGCACC
CCCCTTTTTAAGCTGAAATATTGAACCCCCGGGCTCCCTTTTTTCTTTTC
CCACCCATCCGTTCCCAAGTTCCTCTCCCCTAATCCCCTTTTCCTTATGG
TCCCAGCCCCTCACTTCCTCTCTTCCCAATCCCCCCGGGGTTGACAGCCC
CCAACCTCCCTCCCATCCCCCTATTCGCCTA
NNNNCCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCCCCTCAAAGGAGAA
GGGGAGGGAGGAATGGGGGAAGGATCTGCAGGGGGTACTGGGGGGAGATG
GGGNNTGATNTTNNNNNNNNNTNNTNNTGGGGGGGGGGGGNNNNNNNNNN
NNTNNNNNNNNNNNGGNNNGNGNNNNNNGNNGGGNNGGGGGTGTTGGTGT
TGGGGGGGGTTTTTTTTTTTGGTGGGGGGGNTNTGGGGTGGTTGGTTTTT
TTTTGNNGGGGGGGGGGGGGGNGGNGGTTTTTTTTTTTTTGNGGNGGGGN
GGGGGGGGGGGGGGGGGTTTTTTTTCTGTTNNNNNNGGGGGGGGGGGGGG
GTTTGTTTNTTTTTTTTTTGTGNNGTTTTNNNNTTTTGTTTTTTTTTNTG
TGTGNNNNTTTTTTTTTTTTTTTNGTTGGNGTTGTTGTTTGGTTTTNNNT
NTTTGTTGTTTGTTTTTTTTTGTTTGTGTTTTTTTTTTTGTTTGTTTGTN
TTTTTTTTTTTTTTTTTTGTTGTNTTTTTTTTNGTTGTTNTTTTTTTTTT
GTGTGTTTTTTTTTTTTGGTGTTTTTTTGTTTTTGTTTTTTTTTTTTTGT
GTGGGTTTTTGTGGCTTTTTTTTTTTTGTTTTTTGTTTTTGTGTTTTTTG
TTGGTTTTTTTTGTGTTGTGTGTTGCTGTTTTNTTTTTTTTTTTTTGTCT
CTTTTTCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_f21.b1 MSMg01no389_f21.b1 CHROMAT_FILE:
MSMg01no389_f21.b1 PHD_FILE: MSMg01no389_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:57 2005
         (413 letters)



>mm_chr8_67458204_67459016
          Length = 813

 Score =  745 bits (385), Expect = 0.0
 Identities = 400/405 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagaccagactgaattctgtaccaagtccaaggctagcttgaattacctcacta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagaccagactgaattctgtaccaagtccaaggctagcttgaattacctcacta 264

                                                                       
Query: 65  agacactgctacaaaaaggaaacctaactggggtaagggattcaattggagggacagttg 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 agacactgctacaaaaaggaaacctaactggggtaagggattcagttggagggacagttg 324

                                                                       
Query: 125 aagacagaacaaagacaaagtatagtgacacagatgtgcgacgatgccctgctgagacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagacagaacaaagacaaagtatagtgacacagatgtgcgacgatgccctgctgagacac 384

                                                                       
Query: 185 cggatgttaacctaaaaatctcataaaggtcaataaaaggctggtttttgagacagggtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cggatgttaacctaaaaatctcataaaggtcaataaaaggctggtttttgagacagggtg 444

                                                                       
Query: 245 tctgtagctttgactgtcctggaactctccatagagcagggtggcctaaaactcagagat 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctatagctttgactgtcctggaactctccatagagcagggtggcctaaaactcagagat 504

                                                                       
Query: 305 gcactggtactcgggtatcctgaatgctggaactaaaggcgtgcaccaccacagctctgt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 gcactggtactcgggtatcctgaatgctggaactaaaggcgtgcaccaccaccgctctgt 564

                                                        
Query: 365 aagatagcctcttatatccttcagtggcaaagtatttacctagca 409
           |||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 565 aagacagcctcttacatccttcagtggcaaagtatttacctagca 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)