BAC Information

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BAC

Clone NameMSMg01-389M06
Chromosome8 (Build37)
Map Location 115,104,438 - 115,104,713
singlet/doubletsinglet
Overlap geneCntnap4
Upstream geneZnrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneLOC100042061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389M06.T7 (MSMg01no389_m06.b1)MSMg01-389M06.TJ (MSMg01no389_m06.g1)
ACCAG491943AG491944
length789763
length of high quality
(start - end)
276 (137 - 412)181 (71 - 251)
definitionCHROMAT_FILE: MSMg01no389_m06.b1 PHD_FILE: MSMg01no389_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:28 2005CHROMAT_FILE: MSMg01no389_m06.g1 PHD_FILE: MSMg01no389_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACAGGATC
CGCGGAATTCCCTTGTTTCCCATTTAGACAGAATTGCTTTTATTTTAGCA
ATGTTCTTTTAATTAAGTCCTAAACATCTAAAACATGGCAAATGTAAATA
TGTATTATAAATCCTTAACTATGAGGATCAGTGAGCATCCACGCAGCTTT
CTGCCTTGGAGAGAGAAACTCTTCCTGTTTAAAATCAGCTCAAATTGAGA
GATAAAACCGAACGATGTGACAAATGCTAAACTTTGTGATGGCCTGCTCT
GGGTATAAGCATCACTCTACCTCACTGTCTTTGAGAGCCACACTCTGCTC
CAGTTTGCCCAGTGGCTGTAATGCTACAATCTCTCCTGCTCTTGTCCCAC
CCTCTGTGTCATGCTGACAAAAGCTAGAATTTGGCGCACGATGGGAAGTC
GAGTCAAACACTACACTGATCCTGCCACATCCCACGAAATAATCGAATTC
TGAACCGATCCCACAGAGACACCCTTGCCTATGCTCCGGCGCCCCTCAAC
CCTGCACCCTCCACGACACTTCCGCTACCGCTTCTACTGTCCTCCTACCA
CCGCATTTCCTCTACTTTCTCTCCCTCACAACTCCTATATNTCCTATACC
CATGTCGCCTTCCTTTCCCCCTTATCCTACCTCCCTCTCCCCCTATTTCC
CCCCGTCCATCCTCCACACCCCGTTCTATACCCACCCCCTCCCTATTCCC
ACACCCCTTTTTCTCCCCCCCTTCCCTTCCCCCTCTTCG
NCTCGATGCTGTGGGAGGCCTGGCGGNCGCCTGGTTCAACAATTTAGGTG
AACTATAGAAGTTTCGCGCAATTCTTTGTTTAGCTCTGAGTCCCATTTTT
TAATGGGGTTATTTGATTTTCTGGAGTCTACCTTCTTGGGTTCTTTATAT
ATATTGGATGTTAGTCCCTTATCAGATTTAGGATAGGGAAAGATCCTTTC
CCAATCTGTTGGTGGCCTTCTTGTCTTATTGACGGTGTCTTTTGCAGAAG
CTTTGCAATTTTATGAGGTCCCATTTGGTGATTGCTGGTCTATTCAGGAA
TTTTTCCCCTGTACCCATATTTTTGTTTCTTTCCCCCACTTTCTCCTCTA
TAAGTTTCAGTGTCTCTGGCTTTACATGGAGTTGCTTAATCCACTTAGAT
TTGACCTTAGTACCAGGAGATAGGAATGTACCAATTCCCATTCTTCTACG
TGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTT
TCCACTGGATGGCTATAGCTCCCTTGCCAAAGATCTATTGAACTCTAGGT
GTGGGCGCTCCATTCCAGGCTCGTCCCTTCTCTTCCATTGGTCTTACTGT
CTGTTCATATATCTTTACTCTGCCCGCTTTCTTCTTCCGCCTTCCTTATC
TCTCTTTCGTTTTTTTTTTTTTTTTTATCTCTGTCCCACCCCTTTCCATC
ATTATTCCCTCTTTTTTCTTTCCACTCTATTTACTACTTTTCTCCCCTCT
TTGTTCTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_m06.b1 MSMg01no389_m06.b1 CHROMAT_FILE:
MSMg01no389_m06.b1 PHD_FILE: MSMg01no389_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:28 2005
         (276 letters)



>mm_chr8_115104238_115104913
          Length = 676

 Score =  495 bits (256), Expect = e-144
 Identities = 271/276 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcaaatgtaaatatgtattataaatccttaactatgaggatcagtgagcatccacgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggcaaatgtaaatatgtattataaatccttaactatgaggatcagtgagcatccacgcag 417

                                                                       
Query: 61  ctttctgccttggagagagaaactcttcctgtttaaaatcagctcaaattgagagataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctttctgccttggagagagaaactcttcctgtttaaaatcagctcaaattgagagataaa 357

                                                                       
Query: 121 accgaacgatgtgacaaatgctaaactttgtgatggcctgctctgggtataagcatcact 180
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 accgaatgatgtggcaaatgctaaactttgtgatggcctgctctgggtataagcatcact 297

                                                                       
Query: 181 ctacctcactgtctttgagagccacactctgctccagtttgcccagtggctgtaatgcta 240
           |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 296 ctacctcactgtctttgatagccacactctgctccagtttgcccagtgactgtaatgcca 237

                                               
Query: 241 caatctctcctgctcttgtcccaccctctgtgtcat 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 caatctctcctgctcttgtcccaccctctgtgtcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)