Query= MSMg01no389_o22.b1 MSMg01no389_o22.b1 CHROMAT_FILE:
MSMg01no389_o22.b1 PHD_FILE: MSMg01no389_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:41 2005
(141 letters)
>mm_chr8_127134642_127135182
Length = 541
Score = 234 bits (121), Expect = 2e-66
Identities = 140/155 (90%), Gaps = 14/155 (9%)
Strand = Plus / Minus
Query: 1 gtcagatactcaccaaccccagcatccacaaagcaaaagctggtgagagatatactcagg 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtcagatactcaccaaccccagcgtccacaaagcaaaagctggtgagagatatactcagg 257
Query: 61 tcttaccagggccatggagggagcccacagttgtaggatgctcagtgtgtgtgtgt---- 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcttaccagggccatggagggagcccacagttgtaggatgctcagtgtgtgtgtgtgtgt 197
Query: 117 ----------ttatggtatgtgtggtttgtgtgtt 141
|||||||||||||||||||||||||
Sbjct: 196 gtgtgtgtgtttatggtatgtgtggtttgtgtgtt 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space: 70889
Effective search space used: 70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no389_o22.g1 MSMg01no389_o22.g1 CHROMAT_FILE:
MSMg01no389_o22.g1 PHD_FILE: MSMg01no389_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:41 2005
(400 letters)
>mm_chr8_126932522_126933320
Length = 799
Score = 675 bits (349), Expect = 0.0
Identities = 388/401 (96%), Gaps = 3/401 (0%)
Strand = Plus / Plus
Query: 1 cagtgctcacagactgaggcagggattgtgaagcaggct-ggctggcaaggctagcctgc 59
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 201 cagtgctcacagactgaggcagggattgtgaagcaggctagg-tggcaaggctagcctgc 259
Query: 60 atcgggagctctgcattcaagtgagaggcctgcctcaatgaacaaggtgattaatcatgg 119
|||||||||||||| ||||| |||||||||||||||||||||||||||| | |||||||
Sbjct: 260 atcgggagctctgcgttcaactgagaggcctgcctcaatgaacaaggtgctcgatcatgg 319
Query: 120 aaaagcctcaggatcaacctgggatcaacacatgtgtagtcatacatgtgcactacatgt 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaaagcctcaggatca-cctgggatcaacacatgtgtagtcatacatgtgcactacatgt 378
Query: 180 acacataatcatacaaatgtgaaatacatacacacattaaaaaagtaagcaaagaaatgc 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 379 acacataatcatacaaatgtgaaatacatacacacatttaaaaagtaagcaaagaaatgc 438
Query: 240 acacagagcactcatggataccacctccatgacagatgaaatgtgcccagactccgaggc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acacagagcactcatggataccacctccatgacagatgaaatgtgcccagactccgaggc 498
Query: 300 tgggtgcctctacctgcaggaaccacagtcttcagaatgtctggggggggagggaggctg 359
||||| |||||||||||||||||||||||||||| |||| |||| |||||||||||||||
Sbjct: 499 tgggtacctctacctgcaggaaccacagtcttcaaaatgactggagggggagggaggctg 558
Query: 360 ttcatcctgcaggcttagggcagaagatggagttttagaag 400
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttcatcctgcaggcttagggcagaagatggagttttagaag 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 799
Length adjustment: 9
Effective length of query: 391
Effective length of database: 790
Effective search space: 308890
Effective search space used: 308890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
