Query= MSMg01no390_m04.b1 MSMg01no390_m04.b1 CHROMAT_FILE:
MSMg01no390_m04.b1 PHD_FILE: MSMg01no390_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:46 2005
(279 letters)
>mm_chr8_109711052_109711730
Length = 679
Score = 487 bits (252), Expect = e-142
Identities = 272/279 (97%), Gaps = 1/279 (0%)
Strand = Plus / Plus
Query: 1 cctatttggnttcagcttattttgaacaaagatctttgtctctttctactggaatgtgca 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctatttggtttcagcttattttgaacaaagatctttgtctctttctactggaatgtgca 260
Query: 61 cacagtgaatgtttgttagaactacacaataaagatactggtttccttttcttgtcctga 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 cacagtgaatgtttgttagaactacacaataaagatactgttttccttttcttgtcctga 320
Query: 121 ctacggttgcttttttttttttttttttttttataaaacttttgtttttaaggaaagggt 180
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 321 ctacggttgcttttttttttttttttttttt-ataagacttttgtttttaaggaaagggt 379
Query: 181 actgtgctgcttaggtgttgtggatgaagacagttggggtgcacaatgttcttcggtgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actgtgctgcttaggtgttgtggatgaagacagttggggtgcacaatgttcttcggtgcc 439
Query: 241 tctgctattttttcgtataacctaagatagggtgcgcgg 279
||||||| |||||||||||||||||||||||||||||
Sbjct: 440 tctgctaacatttcgtataacctaagatagggtgcgcgg 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no390_m04.g1 MSMg01no390_m04.g1 CHROMAT_FILE:
MSMg01no390_m04.g1 PHD_FILE: MSMg01no390_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:47 2005
(486 letters)
>mm_chr8_109892852_109893737
Length = 886
Score = 932 bits (482), Expect = 0.0
Identities = 485/486 (99%)
Strand = Plus / Minus
Query: 1 cactctgctttgaaactactgtgccttatgcttccttataatgatctgaacatttcaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cactctgctttgaaactactgtgccttatgcttccttataatgatctgaacatttcaaat 627
Query: 61 gatactgagaaatttgagttccttactattttgaatgccaaataagaacattcctgaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gatactgagaaatttgagttccttactattttgaatgccaaataagaacattcctgaagt 567
Query: 121 ctgctgagatgagccaggagaattttgtatttggtttattgtgcctcctgtagtgttgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctgctgagatgagccaggagaattttgtatttggtttattgtgcctcctgtagtgttgtg 507
Query: 181 aaataaagtagcctgtggctggggtgaagaagtgcttccttggattccagggatgttgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaataaagtagcctgtggctggggtgaagaagtgcttccttggattccagggatgttgtt 447
Query: 241 ctgcggggaataaagaggagactgctgcatgtctggttggtttatactggtttgcaatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctgcggggaataaagaggagactgctgcatgtctggttggtttatactggtttgcaatgc 387
Query: 301 aaacatggatgctggagagaggaagagtgttacttgctgatcttgagaactaggtgaccc 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agacatggatgctggagagaggaagagtgttacttgctgatcttgagaactaggtgaccc 327
Query: 361 ttgaaccaactggatctgaggagagctatggaacaaggaggtctgtggtgactcagactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttgaaccaactggatctgaggagagctatggaacaaggaggtctgtggtgactcagactg 267
Query: 421 cgtaggacctgggttctgaagtgaggaaaccgtaggctgattctgaaattgcatgggctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cgtaggacctgggttctgaagtgaggaaaccgtaggctgattctgaaattgcatgggctg 207
Query: 481 ctgctc 486
||||||
Sbjct: 206 ctgctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
