Query= MSMg01no390_o16.b1 MSMg01no390_o16.b1 CHROMAT_FILE:
MSMg01no390_o16.b1 PHD_FILE: MSMg01no390_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:58 2005
(244 letters)
>mm_chr8_108895886_108896529
Length = 644
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%)
Strand = Plus / Minus
Query: 1 gagtatgacacgggaatgttcgcattcttggtgccagaatgagagctgaaattggcactc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagtatgacacgggaatgttcgccttcttggtgccagaatgagagctgaaattggcactc 385
Query: 61 acctaattctcctccctttgttcctgtggggagtttctttgagacagctcatgctaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acctaattctcctccctttgttcctgtggggagtttctttgagacagctcatgctaaaag 325
Query: 121 cttttggtaatggtttcccgtgaagacacaccaattccccactggataattaggatgtag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttttggtaatggtttcccgtgaagacacaccaattccccactggataattaggatgtag 265
Query: 181 cagaatcctctgagaatggttgtactctccaaaggctgtcgctgccacggcccagggact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagaatcctctgagaatggttgtactctccaaaggctgtcgctgccacggcccagggact 205
Query: 241 gggg 244
||||
Sbjct: 204 gggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no390_o16.g1 MSMg01no390_o16.g1 CHROMAT_FILE:
MSMg01no390_o16.g1 PHD_FILE: MSMg01no390_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:58 2005
(494 letters)
>mm_chr8_108766089_108766989
Length = 901
Score = 890 bits (460), Expect = 0.0
Identities = 488/501 (97%), Gaps = 9/501 (1%)
Strand = Plus / Plus
Query: 1 tccttgttctctgctctgtgaggtctgccgggtgttctgtcttcccgtagtgctcccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttgttctctgctctgtgaggtctgccgggtgttctgtcttcccgtagtgctcccctg 260
Query: 61 agagcctttcccgtccaaacctgctctgctggaagccttttcctctgggatcacagcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagcctttcccgtccaaacctgctctgctggaagccttttcctctgggatcacagcccc 320
Query: 121 ac-tgtcagctatgcctcttctgtttttatctgttgcacctttctgaaatcccctaatat 179
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acct-tcagctatgcctcttctgtttttatctgttgcacctttctgaaatcccctaatat 379
Query: 180 gtaatctgaccgtggagctctctgaccgaggcttcagcccgggtg---tttaggaggagt 236
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 380 gtaatctgaccgtggagctctctgaccgaggcttcagcccgggtggagttgaggaggagt 439
Query: 237 ctccgggaccccttggagttgtatacagaaatatatctgcacatgcatgcattttgtggg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctccgggaccccttggagttgtatacagaaatatatctgcacatgcatgcattttgtggg 499
Query: 297 gagagaagactccaagcataaatccttctccagtggatctgtgacccataaaggcacccc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagagaagactccaagcataaatccttctccagtggatctgtgacccataaaggcacccc 559
Query: 357 tacttttagggagccccttgaagg----gtaaatgggccagatggggaagaaatttgtca 412
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 560 tacttttagggagccccttgaaggaagggtaaatgggccagatggggaagaaatttgtca 619
Query: 413 ccatggactagaaggtaccttcctgctagtgtagcaggtcttagctgggccttctgactg 472
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccatggactagaaggcaccttcctgctagtgtagcaggtcttagctgggccttctgactg 679
Query: 473 gcttgtggaggntgtttccta 493
| ||||||||| |||||||||
Sbjct: 680 ggttgtggagggtgtttccta 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 901
Length adjustment: 10
Effective length of query: 484
Effective length of database: 891
Effective search space: 431244
Effective search space used: 431244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
