Query= MSMg01no391_c04.b1 MSMg01no391_c04.b1 CHROMAT_FILE:
MSMg01no391_c04.b1 PHD_FILE: MSMg01no391_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:15 2005
(533 letters)
>mm_chr8_68491890_68492825
Length = 936
Score = 1006 bits (520), Expect = 0.0
Identities = 531/536 (99%), Gaps = 3/536 (0%)
Strand = Plus / Minus
Query: 1 ggaattcatcactgtttctccttccttttctccattccccaagtctgaggaaacagtact 60
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 736 ggaattcatcactgtctctccttccttttctccattccacaagtctgaggaaacagtact 677
Query: 61 ggaaccccaaatcacatcatcaaatcataggaagtcatatcaccaaatatatttccaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggaaccccaaatcacatcatcaaatcataggaagtcatatcaccaaatatatttccaagt 617
Query: 121 cagcgtagactgatacattactttaacaaagatgcttcaatttcaaggacacatgatttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cagcgtagactgatacattactttaacaaagatgcttcaatttcaaggacacatgatttg 557
Query: 181 catttggtgaggaagctgccaaaaggaaagcatcatctacaatgaattactcagagaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 catttggtgaggaagctgccaaaaggaaagcatcatctacaatgaattactcagagaagc 497
Query: 241 ccagaattttgctgtaagttctgactgcatccttgctttagattgtcatacttaaaacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ccagaattttgctgtaagttctgactgcatccttgctttagattgtcatacttaaaacca 437
Query: 301 ggtcagttaccatgggcagggattgtaaatgcactttgcattcaaagatataatgaagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggtcagttaccatgggcagggattgtaaatgcactttgcattcaaagatataatgaagct 377
Query: 361 tattttattcctcacactggcatcttttttttttttttgctatattgttttaattgtgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tattttattcctcacactggcatcttttttttttttttgctatattgttttaattgtgct 317
Query: 421 tgtggtcccctttgtcctcagcaactatccttggaggaaataataa---caacaataaat 477
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 316 tgtggtcccctttgtcctcagcaactatccttggaggaaataataataacaacaataaat 257
Query: 478 atctgatattgatctggaggtaagatatgcacatggaatctgtgaatcatttaaaa 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atctgatattgatctggaggtaagatatgcacatggaatctgtgaatcatttaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 936
Length adjustment: 10
Effective length of query: 523
Effective length of database: 926
Effective search space: 484298
Effective search space used: 484298
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no391_c04.g1 MSMg01no391_c04.g1 CHROMAT_FILE:
MSMg01no391_c04.g1 PHD_FILE: MSMg01no391_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:15 2005
(508 letters)
>mm_chr8_68300722_68301621
Length = 900
Score = 772 bits (399), Expect = 0.0
Identities = 479/510 (93%), Gaps = 12/510 (2%)
Strand = Plus / Plus
Query: 1 tgctgttgtcattttggtttattgctgtctacagaaaccacaaagaaaactgaagtctct 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tgctgttgtcattttggtttattgctgtctacagaaaccacaaagacaactgaagtctct 260
Query: 61 ggccacagacacatgtcacaaccttgctgatagaaacaccttacaagtagtaggacagga 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ggccacagacacatgtcacaaccttgctgatagaaacactttacaagtagtaggacagga 320
Query: 121 gacat--tactcttcctcctactccttcttccttctaaaacttcacattagtaaagaaca 178
| || |||||||||| |||| ||||||||||||| |||||||||||| | ||||| |
Sbjct: 321 -a-atgctactcttccttttactgcttcttccttctagaacttcacattact-aagaaaa 377
Query: 179 aacagacagaggagagggtctaagaaataaatttgatagggtgttcagctctttgagata 238
|||||||||||||||| ||||| ||||||||||||||||||| |||| ||| | ||
Sbjct: 378 aacagacagaggagagagtctaggaaataaatttgatagggtattcatctcct-----ta 432
Query: 239 agaaaatagataaggactctagctaaaagccactgggcaagtgaggacactttacatgga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agaaaatagataaggactctagctaaaagccactgggcaagtgaggacactttacatgga 492
Query: 299 tgctacagaattggctgtggtccttgactttttctgctgatgctctctctgcttccttcc 358
||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct: 493 tgctacagaattggctgtggtccttgactttccctgctgatg--ctctctgattccttcc 550
Query: 359 ccacatctaatcacaacttcttaacctactgcaggtcccagtcttcatgtcgtaggtttt 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 551 ccacatctaatcacaacttcttaacttactgcaggtcccagtcttcatgtcgtaggtttt 610
Query: 419 agtgcttgaagatgcccacttattgcccacaatcctttcttttccctgtgntgaatttct 478
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 611 agtgcttgaagatgtccacttattgcccacaatcctttcttttccctgtgttgaatttct 670
Query: 479 accatattgcagcttttggaatctttctgg 508
||||||||||||||||||||||||||||||
Sbjct: 671 accatattgcagcttttggaatctttctgg 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 900
Length adjustment: 10
Effective length of query: 498
Effective length of database: 890
Effective search space: 443220
Effective search space used: 443220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
