BAC Information

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BAC

Clone NameMSMg01-391G03
Chromosome8 (Build37)
Map Location 36,765,048 - 36,933,808
singlet/doubletdoublet
Overlap geneLOC100041572, Gm501, Cldn23
Upstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1
Downstream geneLOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391G03.T7 (MSMg01no391_g03.b1)MSMg01-391G03.TJ (MSMg01no391_g03.g1)
ACCAG493169AG493170
length750846
length of high quality
(start - end)
382 (71 - 452)112 (84 - 195)
definitionCHROMAT_FILE: MSMg01no391_g03.b1 PHD_FILE: MSMg01no391_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:34 2005CHROMAT_FILE: MSMg01no391_g03.g1 PHD_FILE: MSMg01no391_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,933,427 - 36,933,808)(36,765,048 - 36,765,159)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTC
TCAAGCATTTACAACAACAACAACCAAAGTTTAGAGAAAATAAAAAGCAT
CACAAAAAGAAACACCAGTAAGAGCCTTAAGAGCTCCTCCTCCATGTCAC
TGCATCTCCCACCTGAACCCCACAGCACGATGCACAAATCCCTTACTGTA
GAGTAGCCAGGGGCACCAGGCCTTAAAGAAATGGGCCAGAGAAAAGTGCA
TCACTGACAACCCAGAGATGCTAGCCTCCTCTGTGGACCACTGATAGATA
TACAAGCCTCCACTGTGGACAGCTAAGAGATATGCTAGCCTCCTCTGTGG
ACCACTCATTGATACCCTAGCTAGCCTCCTGTATGGGGGTCTTGATGAGC
ACCACAGCCGGCTCCTGGAAAGCTCAGGCTCCCATGAAGTTCTGGACTTT
GGAATGCCTGCAAGTTAGGGTCCGAGAAATATAAGGACTTGGGACAAGCC
CGTAGCCTTCCGCGGTTCATTTTTACTGGTGACAATAATGAAAATATCCT
GAACCTGCCCCCTTTAGCTCCACACCCCTTTTGAAGAACCGCCTTTTTCA
TGGTTCCCCCAATAATAAGGGCAAAAACTGGACACCGTATAAAAAAAGAG
GCCCCCGGAAATGGCCCAAAATCCCCCCGGCCCAATTGGTTCCCCCCGGC
TTTCCCCGGGGGGCCAAATCCCCCCCAATTCTCTTTGCCCCCGTAACAAA

NCCGATGATCTGGGTAGGCCTGGCGGCCGCCCGGCTGCACACCTCACGTG
ACCTATAGAAGGTTTCCCAACAATCCCAGGAGNGAGTCCAGCTGGATGTA
GCCGGACAGAAACTGCCTGAATTTTGCGGTCTGCATCTGTAGACTTTCCC
TTCTGTTATTGTGGGATAAAAGAACAGACATTGCCTGAAAACACACAGAA
CAGATCATTGTGTGGCAGTACTCGCATTCACTCTGCAACTTAATCTTTAC
ATCTGTGCAGTTTTATTTTGTCTTCGGTGCCTCTGGGGCACCACACCTCT
GACCAAGCTCACGCCCATATGTTATGCTTACCACGAGGCCACCCGCCACC
TGGTTAACTTTTTTTTACCTCCTGCTATGCCGCCTCACGTACCCCCCTTC
ATCCACCCTTTCCCCCTGACCTTCCACCTTTTTTTCATTTCCCCCCTCCC
CCCCCCTTCCCTTTTTCTTTCCCCCTCCTTCCCCCCCCCCTCCTTCCCCT
CTCTCCCTTTATTTCATCCTTCTCCCCCCCTCCCATCCCTCCCTCCTTCT
TCTTTTTCTCTCTCTTTCCCCTCTCCCCTTTTTCCCCATACTCCTCCCCC
TTTCTCCTCCTCCTTTCCCTTCCCTTCCTTTTCCCCCCCCCTCTCTTCCC
TTCCTTTCTCCCTCTCCCCTCTCCTTTTTTTTCCCCTCTTCCCTCCCCCC
CCCCCCCTCTTCTTCTCCCCCTCCTTATCTATTCTTTCACCCCCCTCCCC
CCCTTCTCCCTTTTCCCCCCCTCCGCTCTCTTTTCTCCTCTCTCCCCCCC
CCTCTTCTTCTCCTTTCCTCTTCCCCTTCTTCGCTTATCTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_g03.b1 MSMg01no391_g03.b1 CHROMAT_FILE:
MSMg01no391_g03.b1 PHD_FILE: MSMg01no391_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:34 2005
         (382 letters)



>mm_chr8_36933227_36934008
          Length = 782

 Score =  739 bits (382), Expect = 0.0
 Identities = 382/382 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaccaaagtttagagaaaataaaaagcatcacaaaaagaaacaccagtaagagccttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 caaccaaagtttagagaaaataaaaagcatcacaaaaagaaacaccagtaagagccttaa 523

                                                                       
Query: 61  gagctcctcctccatgtcactgcatctcccacctgaaccccacagcacgatgcacaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gagctcctcctccatgtcactgcatctcccacctgaaccccacagcacgatgcacaaatc 463

                                                                       
Query: 121 ccttactgtagagtagccaggggcaccaggccttaaagaaatgggccagagaaaagtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ccttactgtagagtagccaggggcaccaggccttaaagaaatgggccagagaaaagtgca 403

                                                                       
Query: 181 tcactgacaacccagagatgctagcctcctctgtggaccactgatagatatacaagcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcactgacaacccagagatgctagcctcctctgtggaccactgatagatatacaagcctc 343

                                                                       
Query: 241 cactgtggacagctaagagatatgctagcctcctctgtggaccactcattgataccctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cactgtggacagctaagagatatgctagcctcctctgtggaccactcattgataccctag 283

                                                                       
Query: 301 ctagcctcctgtatgggggtcttgatgagcaccacagccggctcctggaaagctcaggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ctagcctcctgtatgggggtcttgatgagcaccacagccggctcctggaaagctcaggct 223

                                 
Query: 361 cccatgaagttctggactttgg 382
           ||||||||||||||||||||||
Sbjct: 222 cccatgaagttctggactttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no391_g03.g1 MSMg01no391_g03.g1 CHROMAT_FILE:
MSMg01no391_g03.g1 PHD_FILE: MSMg01no391_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:35 2005
         (112 letters)



>mm_chr8_36764848_36765359
          Length = 512

 Score =  209 bits (108), Expect = 4e-59
 Identities = 111/112 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtccagctggatgtagccggacagaaactgcctgaattttgcggtctgcatctgtaga 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 gagtccagctggatgtagccggacagaaactgcctgaattttgtggtctgcatctgtaga 260

                                                               
Query: 61  ctttcccttctgttattgtgggataaaagaacagacattgcctgaaaacaca 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcccttctgttattgtgggataaaagaacagacattgcctgaaaacaca 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 112
Length of database: 512
Length adjustment: 8
Effective length of query: 104
Effective length of database: 504
Effective search space:    52416
Effective search space used:    52416
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)