Query= MSMg01no391_m23.b1 MSMg01no391_m23.b1 CHROMAT_FILE:
MSMg01no391_m23.b1 PHD_FILE: MSMg01no391_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:08 2005
(399 letters)
>mm_chr8_46029724_46030522
Length = 799
Score = 671 bits (347), Expect = 0.0
Identities = 387/401 (96%), Gaps = 4/401 (0%)
Strand = Plus / Plus
Query: 1 ctctgaaagcatggggaccgcgtctacatcttataactttaggtgaaagtagatgaatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ctctgaaagcatggggaccgcgtctacatcttataactttaggtgaaagtagatgcatca 260
Query: 61 ggaaaaaagagtacgtttgaggaggtattattaaacctatggaaattagcagtcatgttc 120
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ggaaaaaagaatacgtttgaggaggtattactaaacctatggaaattagcagtcatgttc 320
Query: 121 ggcgcacagatgctgtgtgctgttcatgaagactgggcattcgcagtcgttggggcgttt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ggcgcacagatgctgtgtgctgttcatgaagactgggcattcgcagtcgttggggcattt 380
Query: 181 gatatgaaatcttctgatgaagaaataggagggcattaatatcttactttaccaagaaag 240
|| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gacatgaaatcttctgatgtagaaataggagggcattaatatcttactttaccaggaaag 440
Query: 241 ttatttttttctttc--gtgtaagtatggattttagaaatctgcactaaagacgtttaag 298
|| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tt-ttttttt-tttcttgtgtaagtatggattttagaaatctgcactaaagacgtttaag 498
Query: 299 gggatcctagacaccaagactgagctaaggacacgttctgtcttcactttggaaaataga 358
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 499 gggatcctagacgccaagactgagctaaggacacgttctgtcttcactttggaaagtaga 558
Query: 359 aagtagaagtcccaacttaattatgagttcaagccctgtga 399
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 559 aagtagaagtcccaacttaattatgagttcatgccctgtga 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no391_m23.g1 MSMg01no391_m23.g1 CHROMAT_FILE:
MSMg01no391_m23.g1 PHD_FILE: MSMg01no391_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:09 2005
(447 letters)
>mm_chr8_46201773_46202619
Length = 847
Score = 804 bits (416), Expect = 0.0
Identities = 440/448 (98%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 1 ttgtgaagaaacagttcttttgttctgactgactccctgacatcagagttggtccagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttgtgaagaaacagttcttttgttctgactgactccctgacatcagagttggtccagggt 467
Query: 61 gttcagtaagaatgcttatggaacaattttccttggtaccatgggaaccagataaggatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gttcagtaagaatgcttatggaacaattttccttggtaccatgggaaccagataaggatg 407
Query: 121 tgcttttatacccatttcttctagcttccacagaacacaccctgctataaggagagattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tgcttttatacccatttcttctagcttccacagaacacaccctgctataaggagagattg 347
Query: 181 taatcattacttttatgattattttatttctccaagatgcctttaggaaaggcaggcatt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 caatcattacttttatgattattttatttctccaagatgcctttaggaaaggcaggcatt 287
Query: 241 ggataactattctgctgacttatcaatgcccagaggcagttagtgtttgaatgacagagg 300
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ggataacaatcctgctgacttatcaatgcccagaggcagttagtgtttgaatgacagagg 227
Query: 301 gaggaggagctgaaaaagaatttttatcttgactgaaatcctagcactccaggtaagagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 226 gaggaggagctgaaaaagaatttttatcttgactgaaatcctagcactccaggtaagggc 167
Query: 361 tggaagagcgggagttcaaggccagcctgggctacatagagttcaaggccagcctggact 420
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tggaggaatgggagttcaaggccagcctgggctacatagagttcaaggccagcctggact 107
Query: 421 acagg-agaccctgtcaaataataacag 447
||||| ||||||||||||||||||||||
Sbjct: 106 acaggaagaccctgtcaaataataacag 79
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
