BAC Information

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BAC

Clone NameMSMg01-392E19
Chromosome8 (Build37)
Map Location 98,775,889 - 98,776,371
singlet/doubletsinglet
Overlap genenone
Upstream geneBC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Downstream geneLOC333331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392E19.T7 (MSMg01no392_e19.b1)MSMg01-392E19.TJ (MSMg01no392_e19.g1)
ACCAG493866AG493867
length758795
length of high quality
(start - end)
487 (52 - 538)201 (77 - 277)
definitionCHROMAT_FILE: MSMg01no392_e19.b1 PHD_FILE: MSMg01no392_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:47 2005CHROMAT_FILE: MSMg01no392_e19.g1 PHD_FILE: MSMg01no392_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTTTTATGTTTTAAAAGAAGTAATGACCATATAGAAGA
CTCAAACAGATGCATAAGCAAAGGGAATATACTTGAGACCTTTAAAAGAT
AATTTCCAAAATTGAATAAAAATAAATTATGACATAAAAGTCTAAAATAT
AAACAGAAAATTAAGAAAGTAAATAGAGATACTGAAAGTAAAACCCCCAC
CTATTTATATCATCAAACATGGAGAAGACAAGCTGGTACCTAACTAGAAA
CTTTATTTCTCTTGACTGGCATTCATGGTTCTGGAAGGTACTCTGTAGCC
TACCAGATGAAAAAGGTAATTATCAATAGCAGCCAGGTACAAATGCTTTC
ACCTACAACAGTGACCTGCCTACAAGATATGCTAGTACAACTGTGGCACA
TTTGTTATAAGACTTAAAGATTACTTTTTAATAAGTTAAAGGCTTGCTTC
ATGGAAAGGAACCCATACTTGACAATGCTAAATTTGCCAAGAACCTGAGA
CTGGATAGGTCATGGAACTAGGGGAAATCCTAATCTGGTAAAGGAGCTTA
GCAGTAGAATGACTCCTAATGGCATACTGCTATACCCATAAATCAGCGGC
TCACTCACCCCTCATCAGAGAAGCTCCTTCCTGCAGGAAAAGGGAATTAA
CCCCGAGACCCTTGCACTGGAAGTGGGTCCCAAAATTGAAAAATCTTGGG
CCCCTCAT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCAT
CATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGT
GTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGG
TCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCA
ATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTCAAAAGATCTGTTCCTC
TGTTGATTCTGTCACCCTCTCTCTTTTTGTGTGGCAGACAAGCTCTCTTC
TCTGAGTTTCAGTGTTCAGATCAGTTTCTGTTCGTAAGCTCTCTTCTTTC
ATGTAACGTGTACTGCCCATCCGCTCGTTTGCACTCCTCTCCTGGCTGAT
CTGTTCCGTCTTCTTCCCCCCCCTTCCCTCCTATGATTTCGCGTTGCCTC
CCCTAGTTACGCTGGCCCTGTTCTTTCTGCACTTCTATTATTTTTCCCTA
CCCCCTCACGGCTCTTTTGCTCCTCCCCCCTCTTCCTTCGGCTCCCCCCG
CCTTCCCTTGCTACGTCTCTCTTTTTCCCTCCCCCTCCCCTTTTTTTACC
TCCTCCCCTTCCTTCTTCCCTATTCTGTTCGTCCGCTCTCTCCGTTCTTC
CCCCTCTCCCTTGGTGTTTGTTCCCTCTCCCTCGCCGCCTTTTCTCCTCC
CATCATTCCACTCTTTTCTCCCCCCCCTTTTCTCCCCCTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_e19.b1 MSMg01no392_e19.b1 CHROMAT_FILE:
MSMg01no392_e19.b1 PHD_FILE: MSMg01no392_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:47 2005
         (487 letters)



>mm_chr8_98775685_98776571
          Length = 887

 Score =  872 bits (451), Expect = 0.0
 Identities = 475/483 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttttatgttttaaaagaagtaatgaccatatagaagactcaaacagatgcat 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcagttttatgttttaaaagaagtaatgaccatatagaaaactcaaacagatgcat 264

                                                                       
Query: 65  aagcaaagggaatatacttgagacctttaaaagataatttccaaaattgaataaaaataa 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagcaaagggaatatacttgagacctttaaaagataatttccaaaattgaataaaaataa 324

                                                                       
Query: 125 attatgacataaaagtctaaaatataaacagaaaattaagaaagtaaatagagatactga 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 attatgacataaaagtctaaaatataaacagaaaattaagaaaggaaatagagatactga 384

                                                                       
Query: 185 aagtaaaacccccacctatttatatcatcaaacatggagaagacaagctggtacctaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtaaaacccccacctatttatatcatcaaacatggagaagacaagctggtacctaact 444

                                                                       
Query: 245 agaaactttatttctcttgactggcattcatggttctggaaggtactctgtagcctacca 304
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 agaaactttatctctcttgactggcattcgtggttctggaaggtactctgtagcctacca 504

                                                                       
Query: 305 gatgaaaaaggtaattatcaatagcagccaggtacaaatgctttcacctacaacagtgac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatgaaaaaggtaattatcaatagcagccaggtacaaatgctttcacctacaacagtgac 564

                                                                       
Query: 365 ctgcctacaagatatgctagtacaactgtggcacatttgttataagacttaaagattact 424
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 ttgcctacaagatatgctagtacaactgtggcacatttgttataggacttaaagattact 624

                                                                       
Query: 425 ttttaataagttaaaggcttgcttcatggaaaggaacccatacttgacaatgctaaattt 484
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 625 ttttaataagttaaaggcttgcttcatggaaaggaacccatactcgacaatgctaaattt 684

              
Query: 485 gcc 487
           |||
Sbjct: 685 gcc 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)